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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGACTGATATGCCCAGCCCCCATGGAGTCCCTATTGATCTATTAGATCGATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGAAATGATCCAGgttactcaattgtcatttagcttttggatttcaattactacgaacaacattctaatagatttatcattttgttcacag

Basic information

species Arabidopsis thaliana
transcript AT5G22330.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124950862|gb|EL026286.1|EL026286
EST:     CTATGATCCCTCTGAAATGATCCAG                         ATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGC
genomic: CTATGATCCCTCTGAAATGATCCAGgttactcaat ... ttgttcacagATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGC
EST: gi|116443984|gb|EG486576.1|EG486576
EST:     GATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGAAATGATCCAG                         ATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGC
genomic: GATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGAAATGATCCAGgttactcaat ... ttgttcacagATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGC
EST: gi|164226198|gb|ES003248.1|ES003248
EST:     GATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGAAATGATCCAG                         ATTATAGCCATTCGTGCACAAGTTGAAGAA
genomic: GATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGAAATGATCCAGgttactcaat ... ttgttcacagATTATAGCCATTCGTGCGCAAGTTGAAGAA