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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTACACCTTCATTATCAATCTGATACCAATGCACGTGCTTTTGTGCATTGTAACTGGGCGATACTCTCCCCGACTGTACATTGCCTATGCTCCTTTGgtaagaatcttcttccttctggagacagataaaaattattataacaacctataccagtagttgtatatatcacgtaggatgctgaaagatagctaaaattacataatactgaaagttattgacaccaggtttgctcatgcgtatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G19690.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G060611_T01 (Zea mays), 5'ss of exon 9
AGGTTACACCTTCATTATCAATCTGATACCAATGCACGTGCTTTTGTGCATTGTAACTGGGCGATACTCTCCCCGACTGTACATTGCCTATGCTCCTTTGgtaag--aatcttcttccttctggagacagataaaaattattataaca--acctataccagtagttgtatatatc-acgtaggatgctgaaagatagctaaaattacataatactgaaagttattgacaccaggtttgctcatgcgtatgcag
||| ||||| |||||||||||||| || |||||||| || || ||||||||||||||||| || || ||| | || || |||||||| ||||||||  | || ||  |||   ||||||   |  | |  |      ||   | |       | | | |  ||  |    | ||| | | |  ||  || |                                                              
AGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTGCATATGCTCCCCTTgtgagtgaataagcttcctctggttggcgcaatcttctttccagagtgttgtccagaactataacttaccagatccatggatcattttgtag-------------------------------------------------------------

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 9
AGGTTACACCTTCATTATCAATCTGATACCAATGCACGTGCTTTTGTGCATTGTAACTGGGCGATACTCTCCCCGACTGTACATTGCCTATGCTCCTTTGgtaagaatcttcttccttc-tggagacagataaaaattattataacaacctataccagtagttgtatatatcacgtaggatgctgaaagatagctaaaattacataatactgaaagttattgacaccaggtttgctcatgcgtatgcag
||| ||||| || || || ||||| || |||||||| || || |||||||| |||||||| || || ||| | |||||||||||||| ||||| ||| | ||||| ||||  |||  || |  ||  | || | | ||   ||||      ||||    | |||  | | |||  | | |   |||||   |  ||    ||||||     |                                     
AGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatctgtttcagtcatacagttatattagagtttaaataa------atac----atttgcctttttcaattggaaatttgaaatgcacatag---tacataccttggg------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164057675|gb|ES177316.1|ES177316
EST:     TTGTAACTGGGCGATACTTTCCCCGACTGTACATTGCCTATGCTCCTTTG                         GTTGTGTTAGGCACGTTGTTAGCGGCATTGGTGCCTGTTGTTGGTTT
genomic: TTGTAACTGGGCGATACTCTCCCCGACTGTACATTGCCTATGCTCCTTTGgtaagaatct ... gcgtatgcagGTTGTGTTAGGCACGTTGTTAGCGGCATTGGTGCCTGTTGTTGGTTT