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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtgagtttttactttttaacatttttctgatgattgtttacattgaactcctacttgtgatttcttgatacggttcttctcattaaaaaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G18590.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G070553_T01 (Zea mays), 5'ss of exon 9
TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtgagtttttactttttaacatttttc--tgatg-attgtttacattgaactcctacttgtgatttc-----ttgatacggttcttctcattaaaaaaacag
| || || || || || ||||||||  | ||   || ||||||| | || ||||||||||||||||| || ||||  |||||||||||||| || |  | || || | ||    | ||  |||   |  |  || | | |    | | ||     |   |  |          | ||  | ||| |||   | |    ||  
TTTTAATTCTCTTTGGAGGTGAAGATGCCAAAGGGAAGAAACTACATGACCTTCATATGTTTGATCTGAAGTCATTAACATGGCTTCCTCTGAACTATAAgtaagctattctagtctagaattcaacgatagtgtaatatcattactaaagaaagaaaagaaagcatggaggctaattagtttcctcttggtcatttcac--

upper sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 9
TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtga--gtttttactttttaacatttttctgatgattgtttacattgaactcctacttgtgatttcttgatacggttcttctcattaaaaaaacag----------------------------------------------------------------------------------------
| || ||| | || || || |||||  | || | ||||||||| || ||||| |||||||||||||||||||| |  ||||||||||||||  | ||||||| |  || |||||  |||    |  ||  ||| | |  |    || || | | |      |  | ||||   |  | || | |   |    |                                                                                           
TTTTAATATTGTTTGGAGGAGAAGATGCAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAATCCTTGACATGGCTTCCTCTCCACTGCACgtaattgtgtttacgctttgttgtggtt--gattacttctgtttttaaagttcaaaaacaaaagttttgacttgcatgtttttaaggacctgatttaaatgtttccttgcttttgaaatgtaatgctgtgttctttttttttttttaccccatactacctcctaaaatattatatcacttgcag

upper sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G28760.1 (Glycine max), 5'ss of exon 7
TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtga--gtttttactttttaacatttttctgatgattgtttacattgaactcctacttgtgatttcttgatacggttcttctcattaaaaaaacag-------
| || ||| | || || || |||||    || | ||||||||| || ||||| |||||||||||||||||||| |   |||||||||| ||| | | ||||| |  ||||||||  |||    |  ||    |  |  ||| | ||    || |  ||    ||     | |   ||  |  | |  |    ||         
TTTTAATATTGTTTGGAGGAGAAGATGTAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAATCCTTGTCATGGCTTCCACTTCACTACACgtaaatgtttttacgctttgttgtgattgatttcttctttttcttt---ttctttttttaagttcaaaaacaaaatttatgacttccatgtgactatctgctg

upper sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 9
TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtgagt---ttttactt-------tttaacatttttctgatgattgtttacattgaactcctacttgtgatttcttgatacggttcttctcattaaaaaa-acag---------------------------------------------
| || || ||||| || |||||||| ||||| |  |||||||| || ||||| |||||||||||||| || || |  |||||||| |||||| ||||||||| |||   ||| | |        || ||  | |  || ||   | |  | ||||   | |||||    || | ||||     || |  | |||| |    | |                                              
TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggtttcagtcaactgtattgaatttctcactaatatctttaaatattgtctttctactaa-aatattttgaattttttttctttattatatgccatatctccttatgaactattatctaagatttggggttatgtatgtacag