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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtgagtttttactttttaacatttttctgatgattgtttacattgaactcctacttgtgatttcttgatacggttcttctcattaaaaaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G18590.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G070553_T01 (Zea mays), 5'ss of exon 9
TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtgagtttttactttttaacatttttc--tgatg-attgtttacattgaactcctacttgtgatttc-----ttgatacggttcttctcattaaaaaaacag
| || || || || || |||||||| | || || ||||||| | || ||||||||||||||||| || |||| |||||||||||||| || | | || || | || | || ||| | | || | | | | | || | | | | || | ||| ||| | | ||
TTTTAATTCTCTTTGGAGGTGAAGATGCCAAAGGGAAGAAACTACATGACCTTCATATGTTTGATCTGAAGTCATTAACATGGCTTCCTCTGAACTATAAgtaagctattctagtctagaattcaacgatagtgtaatatcattactaaagaaagaaaagaaagcatggaggctaattagtttcctcttggtcatttcac--

upper sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 9
TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtga--gtttttactttttaacatttttctgatgattgtttacattgaactcctacttgtgatttcttgatacggttcttctcattaaaaaaacag----------------------------------------------------------------------------------------
| || ||| | || || || ||||| | || | ||||||||| || ||||| |||||||||||||||||||| | |||||||||||||| | ||||||| | || ||||| ||| | || ||| | | | || || | | | | | |||| | | || | | | |
TTTTAATATTGTTTGGAGGAGAAGATGCAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAATCCTTGACATGGCTTCCTCTCCACTGCACgtaattgtgtttacgctttgttgtggtt--gattacttctgtttttaaagttcaaaaacaaaagttttgacttgcatgtttttaaggacctgatttaaatgtttccttgcttttgaaatgtaatgctgtgttctttttttttttttaccccatactacctcctaaaatattatatcacttgcag

upper sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G28760.1 (Glycine max), 5'ss of exon 7
TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtga--gtttttactttttaacatttttctgatgattgtttacattgaactcctacttgtgatttcttgatacggttcttctcattaaaaaaacag-------
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TTTTAATATTGTTTGGAGGAGAAGATGTAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAATCCTTGTCATGGCTTCCACTTCACTACACgtaaatgtttttacgctttgttgtgattgatttcttctttttcttt---ttctttttttaagttcaaaaacaaaatttatgacttccatgtgactatctgctg

upper sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 9
TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtgagt---ttttactt-------tttaacatttttctgatgattgtttacattgaactcctacttgtgatttcttgatacggttcttctcattaaaaaa-acag---------------------------------------------
| || || ||||| || |||||||| ||||| | |||||||| || ||||| |||||||||||||| || || | |||||||| |||||| ||||||||| ||| ||| | | || || | | || || | | | |||| | ||||| || | |||| || | | |||| | | |
TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggtttcagtcaactgtattgaatttctcactaatatctttaaatattgtctttctactaa-aatattttgaattttttttctttattatatgccatatctccttatgaactattatctaagatttggggttatgtatgtacag