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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCTGTTCAAGACATGCTTCCCTACCTGCGGTTGGGTTACATGTCTGATCCTTCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCGgtaggtagaggatgagtgacctggcaaaacttttttctaagtaatctttgatatttccttgattgcatcaaatgttcagtccctacatgtgaggcctccaatgttactgctacatagaaagttgttgacacacttgtaaaggtttaactctcaagctcttttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G14260.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G14260.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA05G07100.1 (Glycine max), 5'ss of exon 9
AGAAGCTGTTCAAGACATGCTTCCCTACCTGCGGTTGGGTTACATGTCTGATCCTTCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCGgtaggtagaggatgagtgacctggcaaaacttttttctaagtaatctttgatatttccttgattgcatcaaatgttcagtccctacatgtgaggcctccaatgttactgctacatagaaagttgttgacacacttgtaaaggtttaactctcaagctcttttgtag
 ||||||||   ||| |||||||  ||  |||| ||||| ||  | || ||||||||||| |||||||| || || || || ||||||||||||||||| ||| ||      ||  | |    |        ||   ||  | |  ||| | | | |  || |  ||      || || |  ||| |   ||  |    ||  | |  | | | | |                                                 
GGAAGCTGTCTTAGATATGCTTCGTTATATGCGTTTGGGCTATGTTTCAGATCCTTCTGAGATGCAGTCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTgtaagtt-----tgtttcatacagtg----ccttcattatttgaattttaagaatgctgtggtcaca------gtccaatatctataccagatacaagtaaaataa--gttcccttg-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125323997|gb|EL338077.1|EL338077
EST:     TCCCAA-GTCCAGTTTGTCCG                         ATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACT
genomic: TCCCAAGGTCCAGTTTGTCCGgtaggtagag ... tcttttgtagATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACT
EST: gi|86081117|gb|DR376874.1|DR376874
EST:     CTTCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCG                         ATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTC
genomic: CTTCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCGgtaggtagag ... tcttttgtagATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTC
EST: gi|86078005|gb|DR373762.1|DR373762
EST:     ATCCTTCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCG                         ATGASCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTC
genomic: ATCCTTCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCGgtaggtagag ... tcttttgtagATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTC