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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTAGGAACTGATCACTGCACTTTCAATTCTACACAAAAAGCTCTAGGACTTGATGATTTCCGCAGAATACCTAATGGTGTTAATGgtaatagctgacttgactggtttcttgctttctctgctcactgcccctgctaacctgtaaatacttttgaacttgtccatatgtttag

Basic information

species Arabidopsis thaliana
transcript AT5G12200.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g59340.2 (Oryza sativa), 5'ss of exon 12
CTTGTAGGAACTGATCACTGCACTTTCAATTCTACACAAAAAGCTCTAGGACTTGATGATTTCCGCAGAATACCTAATGGTGTTAATGgtaatagctgacttgactggtttcttgctttctctgctcactgcccctgctaacctgtaaatacttttgaacttgtccatatgtttag--------------------------------------------
||||||||||||||||| ||||| ||||| || ||||| |||||| | ||   |||||||||| | |  || |||||||||||||||||||||   ||       ||  ||    | ||  |   | | |         ||| | | | |   |  | | ||     |  ||||                                              
CTTGTAGGAACTGATCATTGCACCTTCAACTCCACACAGAAAGCTTTCGGCTCTGATGATTTCAGAAAGATTCCTAATGGTGTTAATGgtaatccttgtgggttgtgaatttcaacgttgacaaataagtatataaaagaacttttgattttataaggaattcgtgtttggtttgaataaacccagctaaggcatctctctcttaaacgcttgaccccag

upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 9
CTTGTAGGAACTGATCACTGCACTTTCAATTCTACACAAAAAGCTCTAGGACTTGATGATTTCCGCAGAATACCTAATGGTGTTAATGgtaatagct---gacttgactggtttcttgctttctctgctcactgcccctgctaacctgtaaatacttttgaa-cttgtccatatgtttag--
|||||||| |||||||||||||| ||||| || ||||| |||||| | ||   ||||||||| || |  || || |||||||| |||||||    ||   ||||| | || |    || |                  |  | |    |     ||  |||  | || | |  ||   |   
CTTGTAGGTACTGATCACTGCACATTCAACTCCACACAGAAAGCTTTTGGTTCTGATGATTTTCGGAAGATTCCCAATGGTGTAAATGgtagggactctggacttaaatgttagagtggtagtaggatctgtaatatgtattgagacat---ctctcctgagtcctgactacttgaacacag

upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA15G06100.1 (Glycine max), 5'ss of exon 9
CTTGTAGGAACTGATCACTGCACTTTCAATTCTACACAAAAAGCTCTAGGACTTGATGATTTCCGCAGAATACCTAATGGTGTTAATGgtaatagctgacttgactggtttcttgctttctctgctcactgc--ccctgctaacctgtaaatacttttgaacttgtccatatgtttag-----------------
|| |||||||||||||| ||  | || ||||| || || |||||||| ||| ||||||| ||||| | ||| ||||||||||| |||||||||  |    | ||  |   |     ||||    || | |||   |  | | |  |  |||||  |     |||    || || || |                 
CTGGTAGGAACTGATCATTGTGCCTTTAATTCCACCCAGAAAGCTCTTGGAATTGATGACTTCCGGAAAATTCCTAATGGTGTCAATGgtaatcacatgatggatggccctagatatttccagcctaaatgcattctagttgattttgaaatatctc----cttcctaatgtgctttgcaacctgatatatgtag

upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 9
CTTGTAGGAACTGATCACTGCACTTTCAATTCTACACAAAAAGCTCTAGGACTTGATGATTTCCGCAGAATACCTAATGGTGTTAATGgtaatagc-tgacttgactggtttcttgctttctctgctcactgcccctgctaacctgtaaatacttttgaacttgtccatatgtttag-------
|| |||||||||||||| ||  | || ||||| || ||||||||||  ||| | ||||| ||||| | ||| ||||||||||| |||||||||  | |||      ||| |  |||    ||     || |   | |||| |  |  ||||  ||    |||  |  | |  |  |        
CTGGTAGGAACTGATCATTGTGCCTTTAATTCCACCCAAAAAGCTCGTGGAATCGATGACTTCCGGAAAATGCCTAATGGTGTCAATGgtaatcacatgaaagtcttggatatttgtggcctaaatgcatt---cttgctgattttgaaatgtttccttactgatataca-atgcaacctgtag

upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA02G44690.1 (Glycine max), 5'ss of exon 9
CTTGTAGGAACTGATCACTGCACTTTCAATTCTACACAAAAAGCTCTAGGACTTGATGATTTCCGCAGAATACCTAATGGTGTTAATGgtaatagc-tgacttgactggtttcttgctttctctgctcactgcccctgctaacctgtaaatacttttgaacttgtccatatgtttag------
|| |||||||||||||| ||  | || ||||| || ||||||||||  ||| | ||||| ||||| | ||| ||||||||||| |||||||||  | |||      |||    |||    ||     || |   | |||| |  |  ||||  |||   |||  |  | ||    |       
CTGGTAGGAACTGATCATTGTGCCTTTAATTCCACCCAAAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATGgtaatcacgtgaaagtcttggacatttgtggcctaaatacatt---cttgctgattttgaaatgttttcatactgatatacattgcaaactgtag

upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 9
CTTGTAGGAACTGATCACTGCACTTTCAATTCTACACAAAAAGCTCTAGGACTTGATGATTTCCGCAGAATACCTAATGGTGTTAATGgtaata------gctgacttgactggtttcttgctt-tctctgctcactgcccctgctaacctgtaa-----atacttttgaacttgtccatatgtttag---------------------
|||||||| |||||||| ||  | |||||||| ||||| |||||| | ||| ||||||||||||| | ||| ||||||||||| ||||||||||           |   |||| | | | |    ||  |  | | | |||  | || |  ||       ||  ||  |  ||  | | ||| |||                       
CTTGTAGGGACTGATCATTGTGCCTTCAATTCCACACAGAAAGCTTTTGGAATTGATGATTTCCGAAAAATTCCTAATGGTGTCAATGgtaatacaagttatcatcaccactgatatttgggaagtcaattattatttccctagttatcaagttggtctcatttttccgttctaattcttatatttgttgcaatcctgggaacaattag