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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGCAATTTAATTTTTTCTGTTACATCGGGTCCACCAATGAATTCCGTTCCAAATCAAAATTCTGAGCTGgtatgcaaacttcaaacttggtccatatgacttaactttttatttaaaagttccatatgataagcgcttcagttaccggatactgcttatatgttatccttcatatatgttaatctttagcacaagcatttctttgttaacttgaatttcatcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G10800.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10800.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 9
GGCTGCAATTTAATTTTTTCTGTTACATCGGGTCCACCAATGAATTCCGTTCCAAATCAAAATTCTGAGCTGgtatgcaaacttcaaacttggtccatatgacttaactttttatttaaaagttccatatgataagcgcttcagttaccggatactgcttatatgttatccttcatatatgttaatctttagcacaagcatttctttgttaacttgaatttcatcttcag
||   ||   |||| || |||| | |||| ||||||||| | | ||| ||||||||||||||||||||||||||| |  || |   ||||   ||         | | | ||||| ||   ||  ||||   ||  |  |||| || ||    |  ||| ||          ||  || | |||                                              
GGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACCAGTCACTTCTGTTCCAAATCAAAATTCTGAGCTGgtaggttaattc--aactaaatct------tgttattatttatcta---gtgtcatagattacactattcaattccc---catcgctcatgaaaatcaaatcccattttttacc--------------------------------------------