Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTCGGTCTAGCTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTGTAGCGCCGgtaaaatctggaacttaatatgtcgtgtttcagtatatgtccatcatgctattatgttttttaacatgttatatattattgccgtgaag

Basic information

species Arabidopsis thaliana
transcript AT5G10540.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060879|gb|DR356636.1|DR356636
EST:     TGTGCCAGCAGACGGTGTAGCGCCG                         GTCTGGAACAGCGATGTTAGGTTCTACTGTGTCAAAGATTCTTCTGGGAAT
genomic: TGTGCCAGCAGACGGTGTAGCGCCGgtaaaatctg ... tgccgtgaagGTCTGGAACAGCGATGTTAGGTTCTACTGTGTCAAAGATTCTTCTGGAAAT
EST: gi|116452131|gb|EG494723.1|EG494723
EST:     CTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTGTAGCGCCG                         GTCTGGAACAGCGATGTTAGGTTCTACTGTGTCAAAGATTCTTCTG
genomic: CTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTGTAGCGCCGgtaaaatctg ... tgccgtgaagGTCTGGAACAGCGATGTTAGGTTCTACTGTGTCAAAGATTCTTCTG
EST: gi|116476839|gb|EG519431.1|EG519431
EST:     CTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTGTAGCGCCG                         GTCTGGAACAGCGATGTTAGGTTCTACTGTGTCAAAGATTCTTCTGGAAAT
genomic: CTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTGTAGCGCCGgtaaaatctg ... tgccgtgaagGTCTGGAACAGCGATGTTAGGTTCTACTGTGTCAAAGATTCTTCTGGAAAT
EST: gi|86060877|gb|DR356634.1|DR356634
EST:     CTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTGTAGCGCCG                         GTCTGGAACAG-GATGTTAGGTTCTACTGTGTCAAAGATTCTTCTGGGAAT
genomic: CTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTGTAGCGCCGgtaaaatctg ... tgccgtgaagGTCTGGAACAGCGATGTTAGGTTCTACTGTGTCAAAGATTCTTCTGGAAAT
EST: gi|116452116|gb|EG494708.1|EG494708
EST:     CTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTGTAGCGCCG                         GTCTGGAACAGCGATGTTAGGTTCTACTGTGTCAAAGATTCTTCTG
genomic: CTAAGACACTATTTGGAATTGATGTTGTGCCAGCAGACGGTGTAGCGCCGgtaaaatctg ... tgccgtgaagGTCTGGAACAGCGATGTTAGGTTCTACTGTGTCAAAGATTCTTCTG