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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATGGTCAAACTTGTCGGATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCTCATACAATCAAAATTGTGTAGGCGTTTGGGTTGTAGACCTCTCGgtatatctctctctctctccccctacatgctttgttatagtttggcctgtaccatacttgttatctctaagctctccattcaattttctaatgacactctcag

Basic information

species Arabidopsis thaliana
transcript AT5G08390.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08390.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 9
TGGATGGTCAAACTTGTCGGATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCTCATACAATCAAAATTGTGTAGGCGTTTGGGTTGTAGACCTCTCGgtatatctctctctctctccccctacatgcttt--gttata-gtttggcctgtaccatacttgttatctctaagctctccattcaat-tttctaatgacactctcag
 || ||||| |  ||||| ||| | |||||||| || ||||| ||||| |||||||||||||||||||  ||||| || || |||||||| ||| |||||||| ||     | |||        |  |  ||    ||||| |  ||   | |   ||||   |||   ||||  | ||  ||  |  ||||| |   |     |||
GGGTTGGTCTAGATTGTCAGATCTTAATGTTCATGAAGGAAAACTTCTTGGTTGCTCATACAATCAAAGCTGTGTTGGAGTCTGGGTTGTGGACATCTCGgtaaatgcacttatcttcaagagaatttttttctgcttatatgaatgttgtatttgataccatttaatactaatgtgtcttttttacatttctgacctcttgtccag

upper sequence: AT5G08390.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA19G00890.1 (Glycine max), 5'ss of exon 9
TGGATGGTCAAACTTGTCGGATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCTCATACAATCAAAATTGTGTAGGCGTTTGGGTTGTAGACCTCTCGgtatatctctctctctctccccctacatgctttg--ttatagtt-tggcctgtaccatacttgttatctctaagctctccattcaattttctaatgacactctcag
 || ||||| |  ||||| ||| | ||| |||| || ||||| ||||| || ||||||||||||||||  ||||| || || |||||||| ||| |||||||| ||     | |||        |  | ||  |  ||||||   ||   | |   ||||   |||   ||||  |  |  || |  ||||| |   |     |||
GGGTTGGTCTAGATTGTCAGATCTTAATTTTCATGAAGGAAAACTTCTTGGCTGCTCATACAATCAAAGCTGTGTTGGAGTCTGGGTTGTGGACATCTCGgtaaatgcacttatcttaaagagaaatttctgcggcttataggaatgttgtatttgataccatttaatactaatgtgcctttttacatttctgacctcttgtccag

upper sequence: AT5G08390.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 5'ss of exon 8
TGGATGGTCAAACTTGTCGGATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCTCATACAATCAAAATTGTGTAGGCGTTTGGGTTGTAGACCTCTCGgtatatctctctctctctccccctacatgct--------ttgttatagtttggcctgtacc-atacttgttatc--tctaagctctccattcaattttctaatgacactctcag------------
 || ||||| |  || || ||| | ||  |||| ||||||||||| || || ||||||||||| |||| |||||| || || |||||||| || ||||||||||  ||   | |||| ||  ||  ||  |         | | || ||||  | || ||  ||  | ||      ||| || |    | |    | |    ||  || || |             
GGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCTCATACAACCAAAGTTGTGTTGGAGTCTGGGTTGTGGATCTCTCGgtattacttagtttctcaccatctctatattacatgtgactttgattgtttcccttgcactgatggtggtagatagtctgagtttctaactggtgtatggtttgtgacacttaacctcttgaacag