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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTTCAATGCAAGAAAGATAAGGTTAAAATGTGGGCAAACTACGTTCCTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAGgtaacttgtctgcagaaattctttctaaatactgtccttctcctttggttattgagttattggttttatctctctttag

Basic information

species Arabidopsis thaliana
transcript AT5G07350.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 9
AGAACTTCAATGCAAGAAAGATAAGGTTAAAATGTGGGCAAACTACGTTCCTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAGgtaa---cttgtctg--cagaaattctttctaaat---actgtccttctcctttggttattgagttattggttttatctctctttag-------------------------------------------------------------------------------------------------------------
||| |||||    |||||| | | | | || || ||| ||||||| || || ||||| ||||| || |||||||| ||||||||||| ||||| ||||||||||    || |||   ||    ||  | | ||||   |  |    ||    |   | ||     |   | |||  | | |    |                                                                                                              
AGAGCTTCAGGCAAAGAAAAACAGGTTAAAGATTTGGACAAACTATGTACCACCAGCAACAAATTCAAAGGCAATACATGACCAGAATTTTACAGGAAAGgtaaaattttctctaaccattggtttatcccaaattaaaaaggatctcatggtgaataatatccctgaggatttggtttttgaccaaagccaatgacgttgtgtgatccacatatattgtagttgttgtattagtttatcccaaatattcaatcttcattcatttaagtctattttttggacttatctttttccag

upper sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 9
AGAACTTCAATGCAAGAAAGATAAGGTTAAAATGTGGGCAAACTACGTTCCTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAGgtaacttgtctgcagaaa-----ttctttctaaat---actgtccttctcctttggttattgagttattgg---ttttatctctctttag----------
||| |||||    |||||| | | | | || || ||| ||||||| || || || || ||||| || |||||||| ||||||||||| ||||| |||||||||| || |   |  |||     ||  | | ||||   |  |    ||    |   | ||    |   ||    |||  | | |    |           
AGAGCTTCAGGCTAAGAAAAACAGGTTAAAGATTTGGACAAACTATGTACCACCGGCAACAAATTCAAAGGCAATACATGACCAGAATTTTACAGGAAAGgtaaatttttctcgaaaaattggtttatcccaaattaaaagggatctcatggtgaataataatatccctgagaatttggtttttaaccaaacctagtgac

upper sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 8
AGAACTTCAATGCAAGAAAGATAAGGTTAAAATGTGGGCAAACTACGTTCCTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAGgtaa---cttgtctgcagaaattctttctaaatactgtccttctcctttggttattgagttattggttttatctctctttag--------------
 |||||||||   |||||||| | | | |  || ||| ||||||| || || ||||||||||| || |||||||| ||||||||||| ||||| ||||| ||||   ||| |     |||||| |||   ||     ||  | |    |   || | |  || |  || ||||| |    |               
TGAACTTCAAGCAAAGAAAGAGAGGCTAAGGATTTGGACAAACTATGTGCCCCCAGCTACAAATTCAAAGGCAATCCATGACCAGAATTTTACAGGAAAAgtaagtgctttttctgtgaaattatttgacaaggtcatctctgttaactaaatacttaaatagtc-ttctatctttacacatcttcctgtctccag

upper sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
AGAACTTCAATGCAAGAAAGATAAGGTTAAAATGTGGGCAAACTACGTTCCTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAA----Ggtaacttgtctgcagaaattctttctaaatactgtccttctcctttggttattgagttattggttttatctctctttag--------------
||||||||||   |||||  ||    | | | | ||| ||||||| ||||| ||| | ||||| || ||||||||||| |||||||| ||||| |||||    ||||  | |||  || ||    |   ||||| || || ||      |||   || |     |  |||||| ||  | |                
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatcctatcttttataaatggaattttaccc--taattttatgtccatctcatttggcctttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164014379|gb|ES145887.1|ES145887
EST:     CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAG                         GTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGA
genomic: CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAGgtaacttgtc ... ctctctttagGTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGA
EST: gi|116439364|gb|EG481956.1|EG481956
EST:     CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAG                         GTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGATGATGCTGTT
genomic: CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAGgtaacttgtc ... ctctctttagGTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGATGATGCTGTT
EST: gi|116439363|gb|EG481955.1|EG481955
EST:     CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAG                         GTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGATGATGCTGTT
genomic: CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAGgtaacttgtc ... ctctctttagGTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGATGATGCTGTT