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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGATGGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGgtatgtagtttatttatgagaccattgttgtatcaaaggaacatagattcacattaaatttcttgttattacgcag

Basic information

species Arabidopsis thaliana
transcript AT5G06160.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G06160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G178227_T01 (Zea mays), 5'ss of exon 10
TGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGATGGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGgtatgtagtttatttatgagaccattgttgtatcaaaggaacatagattcacattaaatttcttgttattacgcag------------------------
|||||| ||       || |||||||| || ||| | || || ||||||||||| || ||||| || |||||||| ||||| || ||||||||||| ||||||  |||||    |||  |    |   | |   |   |    |    ||   |   | |   ||  ||  | | |                        
TGACGAAGAGCAACAAATCTACAATCCTCTCAAGTTGCCGATGGGTTGGGATGGCAAACCTATCCCCTACTGGCTGTACAAGCTACATGGCCTTGGGCAGgtaactagttgtcatatttgggagtatatttcctagtagcttgttacctctagtcttagtcagtgagatggcacggcagtagcaccaatgctttcactca

upper sequence: AT5G06160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA06G13290.1 (Glycine max), 5'ss of exon 10
TGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGATGGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGgta---tgtagttt--------atttatgagaccattgttgtatcaaagg----aacatagattcacattaaatttcttgttat---tacgcag------
 || |||||      ||| || ||||| || ||  ||||||| || |||||||||||||||||||| |||||||| || || || ||||| || || ||||||   | || ||         ||||  || |||| | ||  |  ||||     || | | |||    ||| ||||     ||    |  | ||      
AGATGAGGAGCAGCAGATATATAATCCCCTAAAATTACCAATGGGATGGGATGGGAAGCCTATACCTTACTGGCTGTATAAGCTACATGGTCTGGGTCAGgtattatatatttcccattaaaattttggaaaccaatattagagaaaagcttttaaaagaaattattgttacatttgccactacctgtttgtagaatcat

upper sequence: AT5G06160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA04G41530.1 (Glycine max), 5'ss of exon 10
TGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGATGGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGgtat-gtagttt--------atttatgagaccattgttg-tatcaaaggaa---catagattcacattaaatttcttgttattacgcag-----------
 || ||||| |    ||| || ||||| || ||  ||||||| || |||||||||||||||||||| || ||||| || || || ||||| || || |||||||  || |||        ||||  || ||     |   ||| | || ||    ||  |   | ||||   || |  ||   || |             
AGATGAGGAGGAGCAGATATATAATCCCCTAAAATTACCAATGGGATGGGATGGGAAGCCTATACCTTATTGGCTGTATAAGCTACATGGTCTGGGTCAGgtattatattttccattaaaattttggaaactgaaatcaatattagagaaaagctattaaaaaaaattattgttatctttgccacacctgtgtatagaat

upper sequence: AT5G06160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv16s0098g00320.t01 (Vitis vinifera), 5'ss of exon 10
TGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGATGGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGgtatgtagtttatttatgagaccattgttgtatcaaaggaacatagattc--acattaaatt-tcttgttattacgcag------------------------
||| |||||      ||| || ||||| || ||| | ||||| || ||||||||||||||||| || |||||| | || || |||||||| ||||| ||||||   |  || | | | |  | |      |   |||   ||||   |||    | |   || ||| | | | | | |                         
TGATGAGGAGCAGCAGATCTATAATCCTCTCAAGTTGCCAATGGGCTGGGATGGGAAGCCTATTCCTTACTGGTTGTATAAGCTTCATGGACTTGGGCAGgta---atcttttgtttcattctaggagccttctaaacatacattttttcttgtactggtttatctggatctcaggaatggttaatttatgcccttttcattt

upper sequence: AT5G06160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S218_51V6.1 (Physcomitrella patens), 5'ss of exon 10
TGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGATGGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGgta-tgtagtt-tatttatgagaccattgttgtatcaaa--ggaacatagattcacattaaatttcttgttattacgcag---------------------
 || |||||       || || ||||| |||||| ||||||| || ||||||||||| || || || || ||||| |||||| | ||||| ||||| |||||| | |  || |        | ||   || || ||     | ||| | ||  || || |  | | ||  | | |   |                      
AGATGAGGAACAGGCAATCTATAATCCTCTGAAGTTACCAATGGGATGGGATGGGAAACCCATTCCTTATTGGCTTTACAAATTGCATGGACTTGGACAGgtaatattattgttcccgctggccccgagtagtctcggcctgaaactttgacccaaat-agctattttaatttaaaataaatgaagttaataaggaagagc

upper sequence: AT5G06160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ22878 (Selaginella moellendorffii), 5'ss of exon 9
TGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGATGGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGgtatgtagtttatttatgagaccattgttgtatcaaaggaacatagattcacattaaatttcttgttattacgcag
 || |||||      | ||||||||||| ||||||| || || || ||||| |||||||| || ||||| ||| | ||||| ||||| ||| | |||||||||   |||     ||||   |   | |||   |||     |||    || | ||   |||   |           
GGAAGAGGAGCAGCAGTTTTACAATCCGTTGAAGCTGCCGATGGGGTGGGACGGGAAGCCGATTCCATATTGGTTGTACAAGCTTCACGGCTTGGGCCAGgtaaaaagt-----tatgctccttcttttg---caagccttcatctcctctcctttgttttgcag-----------

upper sequence: AT5G06160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ30765 (Selaginella moellendorffii), 5'ss of exon 9
TGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGATGGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGgtatgtagtttatttatgagaccattgttgtatcaaaggaacatagattcacattaaatttcttgttattacgcag
 || |||||      | ||||||||||| ||||||| || || || ||||| |||||||| || ||||| ||| | ||||| ||||| ||| | |||||||||   ||||  | |       | || || |       |  |||    || | ||   |||   |           
GGAAGAGGAGCAGCAGTTTTACAATCCGTTGAAGCTGCCGATGGGGTGGGACGGGAAGCCGATTCCATATTGGTTGTACAAGCTTCACGGCTTGGGCCAGgtaaaaagttattct-------ccttcttttgctggccgt-catctcctctcctttgttttgcag-----------