1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTGgtaatctaaggaaacattaatagttggctttggcttgtgttgtaatggctctgttgttgatgtgttggtaaattggatttgtgcag
species | Arabidopsis thaliana |
transcript | AT5G05930.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATCTTCTCCTG ATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCATEST: gi|19743498|gb|AU228851.1|AU228851
genomic: ATCTTCTCCTGgtaatctaag ... atttgtgcagATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCAT
EST: GCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTG ATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCATEST: gi|86084319|gb|DR380078.1|DR380078
genomic: GCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTGgtaatctaag ... atttgtgcagATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCAT
EST: GCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTG ATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCAT
genomic: GCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTGgtaatctaag ... atttgtgcagATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTGgtaatctaaggaaacattaatagttggctttggcttgtgttgtaatggctctgttgttgatgtgttggtaaattggatttgtgcag
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA