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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAACTTGTACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGgtgttgatctcatcactttttcccaatcatcaaattacctaatcttatttaacaaataatctctacttgaatttccctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G03880.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124724222|gb|EH815624.1|EH815624
EST:     ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAG                         GGTTCTCCGTTTTGTAAGCTTGTA
genomic: ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGgtgttgatct ... ttccctgcagGGTTCTCCGTTTTGTAAGCTTGTA
EST: gi|116475228|gb|EG517820.1|EG517820
EST:     ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAG                         GGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
genomic: ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGgtgttgatct ... ttccctgcagGGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
EST: gi|124938018|gb|EL014690.1|EL014690
EST:     ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAG                         GGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
genomic: ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGgtgttgatct ... ttccctgcagGGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
EST: gi|116475229|gb|EG517821.1|EG517821
EST:     ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAG                         GGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
genomic: ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGgtgttgatct ... ttccctgcagGGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
EST: gi|125030829|gb|EL103098.1|EL103098
EST:     ACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAG                         GGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCT
genomic: ACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGgtgttgatct ... ttccctgcagGGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCT
EST: gi|86080278|gb|DR376035.1|DR376035
EST:     ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAG                         GGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
genomic: ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGgtgttgatct ... ttccctgcagGGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
EST: gi|125303306|gb|EL317391.1|EL317391
EST:     ACTCGAATTCTAGGCATATGAG                         GGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
genomic: ACTCGAATTCTGGGCATATGAGgtgttgatct ... ttccctgcagGGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
EST: gi|124747894|gb|EH838024.1|EH838024
EST:     CTACCACCTAAGCCACTCGAATTCTGGGCATATGAG                         GGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
genomic: CTACCACCTAAGCCACTCGAATTCTGGGCATATGAGgtgttgatct ... ttccctgcagGGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
EST: gi|116483992|gb|EG526584.1|EG526584
EST:     ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAG                         GGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
genomic: ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGgtgttgatct ... ttccctgcagGGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTA
EST: gi|124733034|gb|EH824436.1|EH824436
EST:     ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAG                         GGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTA
genomic: ACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGgtgttgatct ... ttccctgcagGGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTA