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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGgtacaattacttggatttggaaggtttgatgtactgagtgtagaattttggcctataatgactctaataccatgatttctttcaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G03730.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os09g39320.1 (Oryza sativa), 5'ss of exon 10
TTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGgtacaatt---acttggatttggaaggtttgatgtactgagtgtagaattt--tggcc--tataatgactctaata--ccatgatttctttcaa-acag
|||| ||||||||| ||||  | || || || |||||||| ||||||||||| || ||| | ||||| ||  | |||||||| |||||||| |||||||||||   ||   |  ||  ||       ||   |  | |   |  |  ||||  | ||   | |||||  || |  |    |||   | |||||   |||
TTGCAATAATGAAAAGCCTGAGACATCCAAATATTGTTCTTTTCATGGGTGCTGTTACTGAGCCTCCCAACCTATCAATAGTTACAGAATACTTGTCAAGgtatggttgtgatgtgccttcaagctattccgttaattatctcaatcatttgatagcaagtttaatgtgtccagcaagtgatgccatttttcattgcag

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA03G34890.1 (Glycine max), 5'ss of exon 10
TTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGg---tacaattacttggat-ttggaaggtttgatgtactgagtgta-gaattttggcctataatgactctaataccatgatttctttcaaacag------------------------
|||| ||||||||| || | || || || ||||||||| |  | |||||||| |||||| | ||||| ||| | ||||| || ||||||||||||||||||   ||||||  ||    |   ||    |||    | |    | || ||    |  | | | ||| || ||| |  ||  |    || | ||                          
TTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaatatctcatctaccggttcctttacctttcctcctataagagggatctcttttcatggctataaaat-atcttacacttgagacctaaaggatttgattgaactgtgcag

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA19G37570.2 (Glycine max), 5'ss of exon 10
TTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGgt---acaattac-ttggatttggaag---gtttgatgtactgagtgta-gaattttggcctataatgactctaataccatgatttctttcaaacag------------------------
|||| ||||||||| || | || || || ||||||||| |  | |||||||| |||||| | ||||| ||||| ||||| || || ||||||||||||||||    |||  |  |   || |   ||    |||    | |    | || ||    |  | | | ||| || ||| |  ||  | |  || | ||                          
TTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATTTATCAATTGTCACGGAATATTTGTCAAGgttttgcaagaatatctcatctaccagttcctttaccttcccccctataagagggatctcttttcatggctataaaat-atcttatacttgagacctaaaggatttgattgaactgtgcag

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G07610.1 (Glycine max), 5'ss of exon 11
TTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGgtacaattactt---ggatttggaaggtttgatgtactgagtgtagaatttt---ggcctataatgactctaataccatgatttct---ttcaaacag------------------
   | |||||||||||  | || || || ||||||||| | || ||||| || |||||||| ||||| || || ||||| || ||||||||||| |||||||   | | ||       ||    |  |||      |  || |   | ||||    | ||||    | |   |||   |||  |     ||| || ||                  
---CAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAAGGTTgtactcctctacatgttcctcatctttttccctcaaagagggaagtttttcaaggctatggataataggatattttgaccttgagattctaagagttcttgacctaagtgcag

upper sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 9
TTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGgtacaattacttggatttggaaggtttgatgtactgagtgtagaattttggcctataatgactctaataccatgatttctttcaaacag----------------------------------
|| | |||||||||||||| || || || || || ||||| || |||||||| || || || || ||||||||||| ||||| ||||||||||| |||||||    ||| ||  |||   ||    |  | |  |   |  |   ||||    || |||||   || |   || |||| ||                                          
TTTCTATAATGAAACGCCTGCGGCATCCGAATATCGTTCTTTTTATGGGTGCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAGgttt--ttaattttattcccaaacaatccttttttcttttcatttttttttattaaaatgaga-tattggtattatttattaagtttctgttccctgaactaaatactagttttgaactgcag