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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGGgtaacttcattttctgatcttgttatgctactctataccttgttccttttgtgtctgacctggctctgtgttcatacatgtgacattttcttgttcactag

Basic information

species Arabidopsis thaliana
transcript AT5G01460.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 9
TCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGGgtaacttcattt--tctgatcttgttatgctactctataccttgttccttttgtgtctgacctggctctgtgttcatacatgtgacattttcttgttcactag----------------------
|||||||| ||| ||||||| ||||| || |||||| |  |||||||||| || ||||||||  |||||||||||||||||||  |||||||  |||||||||  ||   ||  ||| | |||       || || ||  |      ||   | || |        | | | ||   |  |        || || ||||  |                       
TCTGTGGCATGGGTTGCTCATATCATTATCTATCTATTAATTGACCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGTTGGATGATATCTGGGgtatgttggattactcttacctttagtgattattccattaccataagctagagagtatacagacattatatattttaattttcattcagttattcttcatgatgtctgcattctactttcatcag

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 9
TCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGGgtaacttc--attttctgatctt-----gttatgctact-ctataccttgtt-----------ccttttgtgtctgacctg-gctctgtgttcatacatgtgacat---tttcttgttcactag
|||||||| ||| ||||||| ||||| || |||||| |  |||| ||||| || ||||||||  ||||||||||||||||||| ||||||||  |||||||||  ||   ||  ||| | |||      |||| | | | | |||   | |            | || | | | | |  |    || ||  |  | ||||    ||   ||  |  ||||  ||
TCTGTGGCATGGGTTGCTCATATCATTATCTATCTATTAATTGATCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTGGATGATATCTGGGgtatgttggaatactcttacctttagtgattattccattaccataagctatagagtatagagacattatatattttattttcattcagtaattcttcatgatgtatgcattcttctttcatcag

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 8
TCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGGgta--------acttca------ttttctgatctt--gttatgc----tactctataccttgttccttttgtgtctgacctggctctgtgttcatacatgtgacattttcttgttcactag
|| ||||| ||| |  |||| || || || || ||| |  |||| ||||| || ||||||||  ||||||||||||||||||| || ||||| ||||||||||        |  |||      ||||||   |||  ||||||     || |  |||| || |   |  | |   |    |   |||  | | ||| |||| |  | |||||  |||  ||
TCAGTGGCGTGGGTCACTCATATAATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGCTAGATGATGTCTGGGgtatgttggaaagctcaggctatttttctttccttcagttatgtataataattgatacattatatgtaatattcattcagttaatcta-gatgatatatgtaatttgttctt--tcatcag

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 9
TCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGGgtaactt-------------cattttctgatcttgttatgctactctataccttgttccttttgtgtctgacctggc---tctgtgttcat-acatgtgacattttcttgttcactag
|| ||||| ||| |  |||| || || || || ||| |  |||| ||||| || ||||||||  |||||||||||||||| || || ||||| ||||||||||  ||              |||||    || |    |  |     |||  |  | | || | |||   |         |   | |  || | || ||  ||||  |  ||||  ||
TCAGTGGCGTGGGTCACTCATATAATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCTTGAATGAAGTTTTCATTAAGCTAGATGATGTCTGGGgtatgttggaaggctcaggctatttttctttccttcagttatgtataataattgatacattatatgtaatattcattcagttaatctagatgatatatgcaatttgttctttcatcag

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 9
TCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGGgta--------acttca------ttttctgatctt--gttatgc----tactctataccttgttccttttgtg-tctgacctggctctgtgttcat-acatgtgacattttcttgttcactag
|| ||||| ||| | ||||| || || || || ||| |  |||| ||||| || ||||||||  |||||||||||||||| || || ||||| ||||||||||        |  |||      ||||||   |||  ||||||     || |  |||| || |    | |||  | |    |   |   | |  || | || ||  ||||  |  ||||  ||
TCAGTGGCATGGGTCGCTCATATTATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCTTGAATGAAGTTTTCATTAAGCTAGATGATGTCTGGGgtatgttggaaaactcaggctatttttctttccttcagttatgtataataattgatacattatattatatgtaatattctttcaattaatctagatgatatatgtaatttgttctttcatcag

upper sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 9
TCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGGgtaacttcattttctgatcttgttatgctactctataccttgttccttttgtgtctgacctggctctgtgttcatacatgtgacattttcttgttcactag
|| ||||||||||||||||| ||| |||||||| | ||  |||| ||||| || ||||||||  | ||||| ||||||||||| || ||||| ||||||||||       | |    | ||| | | ||    |||    | | | ||   |   ||| ||   |||| |   ||  || |   | ||  | ||       
TCAGTGGCTTGGATTGCTCATATCGTCATATATTTGCTGATTGATCCTCCTCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGGgta---ctgctatagatttttgctgt-ctctgttattttatttcctttcactagatgatcttattctgag---atgtatcttgtacttcttcgtcag----