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GTTCGCAGCAATGGGTGTGAACATGGAGACTGCACAATTTTTTAAACGTGATTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTTCCTTAACTTGgcaagtctcgcaatcacactacagacatcttgaagcaaattttagttccaatgtttttctgaaggtttctcattctgttttccgcacag
species | Arabidopsis thaliana |
transcript | AT4G38510.5 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTGACTCTTTTCCTTAACTTG GCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCACTTACAEST: gi|86066802|gb|DR362559.1|DR362559
genomic: GTGACTCTTTTCCTTAACTTGgcaagtctcg ... ttccgcacagGCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCACTTACA
EST: ATTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTTCCTTAACTTG GCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCACTTACAEST: gi|163992106|gb|ES203115.1|ES203115
genomic: ATTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTTCCTTAACTTGgcaagtctcg ... ttccgcacagGCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCACTTACA
EST: TTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTTCCTTTAACTTG GCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCAEST: gi|116450411|gb|EG493003.1|EG493003
genomic: TTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTTCCTT-AACTTGgcaagtctcg ... ttccgcacagGCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCA
EST: ATTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTTCCTTAACTTG GCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCACTTACA
genomic: ATTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTTCCTTAACTTGgcaagtctcg ... ttccgcacagGCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCACTTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGCAGCAATGGGTGTGAACATGGAGACTGCACAATTTTTTAAACGTGATTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTTCCTTAACTTGgcaagtctcgcaatcacactacagacatcttgaagcaaattttagttccaatgtttttctgaaggtttctcattctgttttccgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA