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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTGCGTACTACAAGATTGCACgtaaggactggtttctcttttctctgcgtccctccagctccattactgaaacactttttaatacag

Basic information

species Arabidopsis thaliana
transcript AT4G38240.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38240.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA06G00230.1 (Glycine max), 5'ss of exon 9
CACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTGCGTACTACAAGATTGCACgtaaggactggtttctct-tttctctgcgtccc---tccagctccattactgaaacactttttaatacag
||||||||||||||||||||    |||||| ||||||| ||  | ||||| |||||||| ||||||||||||   |   ||||   ||||  || || |    |  |     | || | ||    ||       |||
CACTTGGATTTTGAACCAGTTCAAACTGAACGGCCTGGAGAGTTAACTGCTTACTACAAAATTGCACgtaagagttttcttcttgatttccatgtgttctctatttaaaaagaatattcaattgattccattatcag

upper sequence: AT4G38240.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv00s0585g00030.t01 (Vitis vinifera), 5'ss of exon 9
CACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTGCGTACTACAAGATTGCACgtaaggactggtt---tctcttttctctgcgtccctccagctccattactgaaacactttttaatacag-
|||||||||   |||||||||   || |||||||| || ||| ||| ||| |||||||||||||||||||||||||  ||   ||||  || | ||| || ||  |  ||  ||| ||||    ||  || | |   
CACTTGGATAACGAACCAGTGAAGACCGAAAGGCCAGGGGAATTGATTGCATACTACAAGATTGCACgtaaggactttttgattctcacttttttgcttctctaaacttcacttattgaattctttactatttctag