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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGACGAATTTAATAGTCATAATCGGTGGAAAAAGCGTGGTGTAGCTATGGTTCCCACAAAATTTGGCATATCATTTACCACAAAGTTCATGAATCAGgttatctttggttgacatggatcctttttctttcaagttagttatctgtcgagaaactggaacaataagagaaaatctgccatggaaatttcgccaatgcactaccattgcttgcaaagctagaatctaaattttaaaatacttatcttttatttttccctccacattatggggatgttacag

Basic information

species Arabidopsis thaliana
transcript AT4G34890.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34890.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os03g31550.1 (Oryza sativa), 5'ss of exon 9
AGCTGACGAATTTAATAGTCATAATCGGTGGAAAAAGCGTGGTGTAGCTATGGTTCCCACAAAATTTGGCATATCATTTACCACAAAGTTCATGAATCAGgttatctttggttgacatggatcctttttctttcaagttagttatctgtcgagaaactggaaca-ataagagaa-aatctgcca--tggaaatttcgccaatgcactaccattgcttgcaaagctagaatctaaattttaaaatacttatcttttatttttccctccacattatggggatgttacag
 |     || ||||| | | |||| || |||| |||||||||  | |||||||||||||| || ||||| ||||| || || ||||| |||||||||||||| |          | | ||  ||    ||| || ||  |||| |     || |   |   ||  | | |||     | ||  |  ||  || ||| | ||||||  |  ||| | ||                                                                     
TGTAATTGATTTTAACAATAATAACCGTTGGAGAAAGCGTGGCATTGCTATGGTTCCCACCAAGTTTGGGATATCCTTCACTACAAAATTCATGAATCAGgtga----------atagggtcccaaactctatccagaaagttct-----gatagtttaagactcacaggagtttgctttgttaggtgtgaacttcac-aatgcatga--atttcatg---------------------------------------------------------------------

upper sequence: AT4G34890.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G050984_T01 (Zea mays), 5'ss of exon 5
AGCTGACGAATTTAATAGTCATAATCGGTGGAAAAAGCGTGGTGTAGCTATGGTTCCCACAAAATTTGGCATATCATTTACCACAAAGTTCATGAATCAGgttatctttggttgacatggatc--ctttttctttcaagttagttatctgtcgagaaactggaacaataagagaaaatctgccatggaaatttcgccaatgcactaccattgcttgcaaagctagaatctaaattttaaaatacttatcttttatttttccctccacattatggggatgttacag
     |  | ||||| ||| |||| || ||||  ||||| ||  | || ||| |||| ||||||||||||||||| || ||  |||| |||||||||||||| |||     |  |  |    |    | |  || ||| || |   | ||| |    ||||      |         | |    | || ||||     |||||  |  |||  |                                                                       
CATAAATAATTTTAACAGTAATAACCGCTGGAGGAAGCGAGGAATTGCCATGATTCCGACAAAATTTGGCATATCCTTCACTGCAAAATTCATGAATCAGgtgatccaccatgaagctctgccagtctatcattacaaattgga-gtttgtgggattactgatttcct---------tttagttttgatattt----gatgcatgaaaattctt-----------------------------------------------------------------------

upper sequence: AT4G34890.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv06s0004g02030.t01 (Vitis vinifera), 5'ss of exon 9
AGCTGACGAATTTAATAGTCATAATCGGTGGAAAAAGCGTGGTGTAGCTATGGTTCCCACAAAATTTGGCATATCATTTACCACAAAGTTCATGAATCAGgttatctttgg-----ttgacatggatcctttttctttcaagttagttatctgtcgagaaactggaacaataagagaaaatctgccatggaaatttcgccaatgcactaccattgcttgcaaagctagaatctaaattttaaaatacttatcttttatttttccctccacattatggggatgttacag
|| |||| | ||||||  ||| ||||||||||| || ||||| || ||||||||||| ||||| |||||||| || ||||| |||||||| ||||| ||||| || ||||      |||  |    |  || | || ||| ||||||  | |    |   ||  |   |  |  | || ||   |||   | || |  ||||                                                                                      
AGTTGACCAGTTTAATCTTCAAAATCGGTGGAAGAAACGTGGAGTTGCTATGGTTCCAACAAAGTTTGGCATTTCCTTTACAACAAAGTTTATGAACCAGgtaatatttgaaactattggtacaattggttctactgtcaggttagtgcttttataatttac-agtgtaggaccataatatacaccagccagatctt-ccaa--------------------------------------------------------------------------------------