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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATGGCGATTGGAACACTTGCATTATGCTATAACAATGAACAAGTATTCAGAGGCGTTGTGAAACTGAGGCGAGgtaagatgttaagccttagaaattatgtaggccaatccctaatttctatttatgagaaaggaaaacccgttatcttttattatcaacgagcttgagaacgtgtagtagctagccttattatctgaaggctaatatcgctgaacaactatctattgtttag

Basic information

species Arabidopsis thaliana
transcript AT4G34640.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34640.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G04220.3 (Glycine max), 5'ss of exon 9
ATCATGGCGATTGGAACACTTGCATTATGCTATAACAATGAACAAGTATTCAGAGGCGTTGTGAAACTGAGGCGAGgtaagatgttaagccttagaaattatgtaggccaatccctaatttctatttatgagaaaggaaaacccgttatcttttattatcaacgagcttgagaacgtgtagtagctagccttattatctgaaggctaatatcgctgaacaactatctattgtttag
|| ||||| ||||||||||||||||||||||| |||||     | || |||||||| || || ||| ||||||||||||| | |  ||   |  || | ||  |           | ||||  |   |||  |||   |||  |   || |  ||| |   ||| || |  |    | |                                                         
ATAATGGCAATTGGAACACTTGCATTATGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGgtaaca-gcaaatattctgataataatttccttgtgatttgattttgaggcatgctaaacataaagtcaaaat-tggtataagtcacg-gcatatgtgtcttt---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078637|gb|DR374394.1|DR374394
EST:     TCAGAGGCGTTGTGAAACTGAGGCGAG                         GTCTTACTGCTAAAGTCATTGWTCGTACAAAGACAATGGCTGATGTCTATG
genomic: TCAGAGGCGTTGTGAAACTGAGGCGAGgtaagatgtt ... tattgtttagGTCTTACTGCTAAAGTCATTGATCGTACAAAGACAATGGCTGATGTCTATG
EST: gi|125227664|gb|EL241749.1|EL241749
EST:     ATGCTATAACAATGAACAAGTATTCAGAGGCGTTGTGAAACTGAGGCGAG                         GTCTTACTGCTAAAGTCATTGATCGTACAAAG
genomic: ATGCTATAACAATGAACAAGTATTCAGAGGCGTTGTGAAACTGAGGCGAGgtaagatgtt ... tattgtttagGTCTTACTGCTAAAGTCATTGATCGTACAAAG