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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTGAGTGCGAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAGgtaacttgtttctctgtacgcttatttgatattcccaaactattgctatctaaatgccaggtatcagctataaccgtctatgcttctatgtag

Basic information

species Arabidopsis thaliana
transcript AT4G32010.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32010.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S42_132V6.1 (Physcomitrella patens), 5'ss of exon 7
CTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTGAGTGCGAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAGgtaactt----gtttctctgtacgcttatttgatattcccaaactat-tgctatctaaat-gccaggtatcagctataaccgtctatgcttctatgtag-
     |  |||  || |  ||  | || || ||| | |||||||| |||||||| ||||| ||||||||  |||| ||||| ||||||||||| ||||||        |||| ||| |    |||  | | |    |||  |      ||| |  || |     |      ||  |      | || |   ||||  
TATGCAAACCACCATCACTCCCTTGTTCGAGAAAATGCTGAGTGCCAGCGATGCTGGTCGGATTGGTCGTTTGGTGCTTCCAAAAGCATGTGCTGAGgtaggcacggagtttatctttttaattacctaagaagtgcaatgtgcgctttatattgatagttttcttatgtttaagaaaaggaaggcgttcttgtacc

upper sequence: AT4G32010.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ17236 (Selaginella moellendorffii), 5'ss of exon 5
CTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTGAGTGCGAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAGgta-acttgtttctctgtacgcttatttgatattcccaaactattgctatctaaatgccaggtatcagctataaccgtctatgcttctatgtag
       || ||||||| ||| || || || ||||| || ||||| || || || || |||||||| ||| |||||||||| ||||||||||| |||||   | ||||  | ||| |  ||  |||  | |     ||| |     | |  ||||                                    
------CTCTAAAATTACACCCCTGTTCGAGAAAGTACTCAGTGCCAGTGACGCTGGACGTATTGGACGATTGGTTCTTCCAAAAGCATGTGCGGAGgtctgcatgttcttttgtccttttcattggcactgtgcgactgt----gttttgatgcag----------------------------------

upper sequence: AT4G32010.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ30938 (Selaginella moellendorffii), 5'ss of exon 5
CTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTGAGTGCGAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAGgta-acttgtttctctgtacgcttatttgatattcccaaactattgctatctaaatgccaggtatcagctataaccgtctatgcttctatgtag
       || ||||||| ||| || || || ||||| || ||||| || || || || |||||||| ||| |||||||||| ||||||||||| |||||   | ||||  | ||| |  ||  |||  |||     ||| |     | |  ||||                                    
------CTCTAAAATTACACCCCTGTTCGAGAAAGTACTCAGTGCCAGTGACGCTGGACGTATTGGACGATTGGTTCTTCCAAAAGCATGTGCGGAGgtctgcatgttcttttgtccttttcattggcattgtgcgactgt----gttttgatgcag----------------------------------