1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAACCCAACTGGAATTGACCCAACACCAGAACAGTGGGTAAAAATTGCTGATGTCATTCAGGAAAAGAACCATATCCCATTTTTCGATGTTGCATACCAGgtatccccctattcctacatttccgaatatcgtgtttccgagagaagtaagcgaaaccatattatgtaacgctacatgcacctattttccag
species | Arabidopsis thaliana |
transcript | AT4G31990.4 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGTCATTCAGGAAAAGAACCATATCCCATTTTTCGATGTTGCATACCAG GGCTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCATCTGTGAGATTATTTEST: gi|125038549|gb|EL110818.1|EL110818
genomic: ATGTCATTCAGGAAAAGAACCATATCCCATTTTTCGATGTTGCATACCAGgtatccccct ... tattttccagGGCTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCATCTGTGAGATTATTT
EST: ATGTCATTCAGGAAAAGAACCATATCCCATTTTTCGATGTTGCATACCAG GGCTTTGCTAGTGEST: gi|124934931|gb|EL011958.1|EL011958
genomic: ATGTCATTCAGGAAAAGAACCATATCCCATTTTTCGATGTTGCATACCAGgtatccccct ... tattttccagGGCTTTGCTAGTG
EST: ATGTCATTCAGGAAAAGAACCATATCCCATTTTTCGATGTTGCATACCAG GGCTTTGCTAGTGGAAGCCTTGAEST: gi|125002509|gb|EL074778.1|EL074778
genomic: ATGTCATTCAGGAAAAGAACCATATCCCATTTTTCGATGTTGCATACCAGgtatccccct ... tattttccagGGCTTTGCTAGTGGAAGCCTTGA
EST: CATATCCCTATTTTTCGATGTTGCATACCAG GGCTTTGCTAGTGGAAGCCT
genomic: CATATCCC-ATTTTTCGATGTTGCATACCAGgtatccccct ... tattttccagGGCTTTGCTAGTGGAAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACCCAACTGGAATTGACCCAACACCAGAACAGTGGGTAAAAATTGCTGATGTCATTCAGGAAAAGAACCATATCCCATTTTTCGATGTTGCATACCAGgtatccccctattcctacatttccgaatatcgtgtttccgagagaagtaagcgaaaccatattatgtaacgctacatgcacctattttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC