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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATTCTGCATCGGTATCCTAAGGCAGTTAGGCCTTTCTACACAATGACTTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCATCAGAGgtacatctttgagtgattcttttttaccttgtgtgttcacaccaattatgctactgcacatttgatactaagtttacgtgttctgtcctag

Basic information

species Arabidopsis thaliana
transcript AT4G31180.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125308330|gb|EL322415.1|EL322415
EST:     AACTCTTTTGATGTCTTCATCAGAG                         GTGAGGAGATCATATCGGGAGCTCAACGTGTCCATATCCCAGAAGTCTTGG
genomic: AACTCTTTTGATGTCTTCATCAGAGgtacatcttt ... tctgtcctagGTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAGTCTTGG
EST: gi|86059788|gb|DR355545.1|DR355545
EST:     TTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCATCAGAG                         GTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAGTCTTGG
genomic: TTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCATCAGAGgtacatcttt ... tctgtcctagGTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAGTCTTGG
EST: gi|86087262|gb|DR383021.1|DR383021
EST:     TTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCATCAGAG                         GTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAGTCTTGG
genomic: TTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCATCAGAGgtacatcttt ... tctgtcctagGTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAGTCTTGG