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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGGATGCTGATCTTCTCAAACCAGATATTCTTGCTCCAGGCTCTTTAATATGGTCTGCCTGGTCTGCAAATGGAACAGACGAGGCTAACTATATCGgtaagcatttccaaaaatcttgtcagaattatccataagtactctagaccaagaacctaaatgtttagtttttgactattgagcag

Basic information

species Arabidopsis thaliana
transcript AT4G30020.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 9
TTTCAGGATGCTGATCTTCTCAAACCAGATATTCTTGCTCCAGGCTCTTTAATATGGTCTGCCTGGTCTGCAAATGGAACAGACGAGGCTAACTATATCGgtaagcatttccaaaaatcttgtcagaattatccataagtactctagaccaagaacctaaatgtttagtttttgactattgagcag---------------
|| || ||||| ||||||||||||||||||||||| |||||||| ||| | || ||| ||||||||||| ||||||||||||| ||||| || ||| | |||||  ||    |       |      |||   |   | | || ||||      | | ||  | ||| | |||   |    |  |                
TTCCAAGATGCGGATCTTCTCAAACCAGATATTCTAGCTCCAGGTTCTCTCATTTGGGCTGCCTGGTCTCCAAATGGAACAGATGAGGCCAATTATGTTGgtaaatatcagtagtttcaattcatctatttctccctacttctttagatgtcttagccaag-gcttaatctttatatgcgcattaagtcagtcaatccaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164228338|gb|EL986311.1|EL986311
EST:     GACGAGGCTAACTATATCG                         GCGAAGGATTTGCACTAATTTCTGGCACAAGCATGGCTGCACCACACATTG
genomic: GACGAGGCTAACTATATCGgtaagcattt ... tattgagcagGCGAAGGATTTGCACTAATTTCTGGCACAAGCATGGCTGCACCACACATTG