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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCACATGTCGAAGCTACAAGCTTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGgtaagaagtttccctagacttaggtagttttcacccaagtttagctgagcaccgaagagatgtttacggattcttaagggtttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT4G29220.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G29220.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G443985_T02 (Zea mays), 5'ss of exon 9
GCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCACATGTCGAAGCTACAAGCTTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGgtaagaagtttccctagac---ttaggta-gttttcacccaagtttagctgagcac---cgaagagatgtttacggattcttaagggtttgtgcag----
|| || || |||||||||||||| || ||||| || ||||| || |||  |||   |||||||||||| |||||||| ||| ||||||| ||| |||| ||||||    | |   || |   | |  || | |   |  | |  |  |   |  |     |   |    || ||  | |||| ||  ||| |        
GCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttctacgagaggcgaataaattatgctaatatacgatatctgtcaaatatatgtgtcaattaattaactaactcttgagtatttctctgctaat

upper sequence: AT4G29220.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 9
GCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCACATGTCGAAGCTACAAGCTTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGgtaagaagtttccctagact--taggtagttttcacccaagtttagctga---gcaccgaagagatgt------ttacggattcttaagggtttgtgcag
|| || || |||||||||||||| || ||||| || ||||| ||||||  |||   |||||||||||| ||||| || ||| ||||||| ||| |||| ||||||    |     ||||   || || | |   | |  |   ||  |||       | |    ||||      | ||  | ||||  |  | | |    
GCAGTTGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAAGCTGTAAGTGCTGAGAATGGTATAGGTCTCGTCAAGCTAATGGGCCGGCACAGTGgtaagcttctatgagagaccaatatgtggctagtaacatatgatacttgatgcctgtcaattgtatgtgtcaactaactaactcttgggtatgtatctgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164093785|gb|ES101021.1|ES101021
EST:     TTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCG                         GATTCATTGCAATGCATGCCACTCTAGCCAGCCGAGATGTGGACTGTTG
genomic: TTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGgtaagaagtt ... gtttgtgcagGATTCATTGCAATGCATGCCACTCTAGCCAGCCGAGATGTGGACTGTTG