Sequence
atgc intronic sequence ATGC exonic sequenceGTGATTGCTTGTCTTGATGTGAGGACGAATGATAAAGGAGATCTCGTAGTTACTAAAGGGGATCAGTATGATGTGAGAGAGCAATCTAATGAAAACGAGgtttgttgaaaattgttgcttcaatgtcatatcctgcgatgtgttctttgtgaaaaatgaaacattcttgatatttggatgtttttgtgatacgtccttatcttacctttaagctgttgggtttagctaattattaacgtctgtaacaatgctctgaattcattcctttttcttgcacag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G26900.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA18G12920.1 (Glycine max), 5'ss of exon 10
GTGATTGCTTGTCTTGATGTGAGGACGAATGATAAAGGAGATCTCGTAGTTACTAAAGGGGATCAGTATGATGTGAGAGAGCAATCTAATGAAAACGAGgt-ttgttgaaaattgttgcttcaatgtcatatcc-tgcgatgtgttctttgtgaaaaatgaaacattcttgatatttggatgtttt-tgtgatacgtccttatcttacctttaagctgttgggtttagctaattattaacgtctgtaacaatgctctgaattcattcctttttcttgcacag
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GTGATTGCTTGTCTTGATGTGAGAACAAATGATAAGGGGGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTAAGAGAACATACAAAAGAGAATGAGgtattagcaatagtactcattttgttattatatttatggtttttgagtttgctcaaaattcaactagagtatatgccaagacacactgtacaatataatc-----------------------------------------------------------------------------------
upper sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA18G10460.1 (Glycine max), 5'ss of exon 10
GTGATTGCTTGTCTTGATGTGAGGACGAATGATAAAGGAGATCTCGTAGTTACTAAAGGGGATCAGTATGATGTGAGAGAGCAATCTAATGAAAACGAGgt-ttgttgaaaattgttgcttcaatgtcatatcc-tgcgatgtgttctttgtgaaaaatgaaacattcttgatatttggatgtttt-tgtgatacgtccttatcttacctttaagctgttgggtttagctaattattaacgtctgtaacaatgctctgaattcattcctttttcttgcacag
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GTGATTGCTTGTCTCGATGTGAGAACAAATGATAAGGGGGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTAAGAGAACATACAAAAGAGAATGAGgtatcagcaatagtactcattttgttattatatttatggtttttgagtttgctcaaaattgaactagagtatatgccaagacacactgtacaatataatc-----------------------------------------------------------------------------------
upper sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv19s0090g00810.t01 (Vitis vinifera), 5'ss of exon 8
GTGATTGCTTGTCTTGATGTGAGGACGAATGATAAAGGAGATCTCGTAGTTACTAAAGGGGATCAGTATGATGTGAGAGAGCAATCTAATGAAAACGAGgtttgttgaaaattgtt----gcttcaatgtcatatcctgcgatgtgttctttgtgaaaaatgaaacattcttgatatttggatgtttttgtgatacgtccttatcttacctttaagctgttgggtttagctaattattaacgtctgtaacaatgctctgaattcattcctttttcttgcacag
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GTAATTGCTTGTCTTGATGTGAGGACAAATGATAAAGGAGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTAAGAGAAAATACAGGAGAGAATGAGgtacgtaaaagactattcttaactccagcattacagaattt-atatggttttaatctatgattactgagcatggaaagttttgcacttatgtgagatggaa-----------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124927198|gb|EL004957.1|EL004957EST: CAATCTAATGAAAACGAG GTTCGAAACCTTGGCAAACCTGTTGATTTGGCTGGGCAGTATTACAAAGAT
genomic: CAATCTAATGAAAACGAGgtttgttgaa ... tcttgcacagGTTCGAAACCTTGGCAAACCTGTTGATTTGGCTGGGCAGTATTACAAAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATTGCTTGTCTTGATGTGAGGACGAATGATAAAGGAGATCTCGTAGTTACTAAAGGGGATCAGTATGATGTGAGAGAGCAATCTAATGAAAACGAGgtttgttgaaaattgttgcttcaatgtcatatcctgcgatgtgttctttgtgaaaaatgaaacattcttgatatttggatgtttttgtgatacgtccttatcttacctttaagctgttgggtttagctaattattaacgtctgtaacaatgctctgaattcattcctttttcttgcacag
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