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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGAGAATGAACTGCAAGCGATACTTGACTGCAGAGGAGATCGTTGAAGGATCTTCAACTTTGAATCTTGCCTTTGTGGCACAAATCTTCCATGAAAGgtttgtatcgtgatgcactttcatctcccaaaaagctcctagatgatggcttgtcctgtttgattaggctggtgatggtttactcaaagaacagactctt...

Basic information

species Arabidopsis thaliana
transcript AT4G26700.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26700.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os02g48740.1 (Oryza sativa), 5'ss of exon 9
CAGAGAGAATGAACTGCAAGCGATACTTGACTGCAGAGGAGATCGTTGAAGGATCTTCAACTTTGAATCTTGCCTTTGTGGCACAAATCTTCCATGAAAGgtttgtatcgtgatgcactttcatctcccaaaaagctcctagatgatggcttgtcctgtttgattaggctggtgatggtttactcaaagaacagactctt---------------------------------------------------------------------------------
||||||   || | |||||  ||||||||||| |  |||| |||  ||| || ||| | | |||||||||||| |||||||||||||| |||||  |  |||  |||   || |    | |  | || | ||| ||    |  |      || |  |  |  |    |||   | |  ||| | ||     |||  | ||                                                                                 
CAGAGAAGTTGGATTGCAAAAGATACTTGACTCCTAAGGATATCACTGAGGGTTCTGCCAATTTGAATCTTGCATTTGTGGCACAAATATTCCAGCATCGgtaagtagtatgtt----tcttgtttctccaaaggcattaacttttcttttttttatcataaagctagctaa-ggtattttccccatgttgcagtatattcactttaaaagtttcttagctagctgccaatgaattggtcatctgcttatcacttgaatgctattgttccatgatgcacag

upper sequence: AT4G26700.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv19s0090g01440.t01 (Vitis vinifera), 5'ss of exon 8
CAGAGAGAATGAACTGCAAGCGATACTTGACTGCAGAGGAGATCGTTGAAGGATCTTCAACTTTGAATCTTGCCTTTGTGGCACAAATCTTCCATGAAAGgtt-----tgtatcgtgatgcactttcatctcccaaaaagctcctaga------tgatggcttgtcctgtttgattaggctggtgatggtttactcaaagaacagactctt
||||||||||| ||||||| |||||||||| | || |||| || |||||||| ||  ||| ||| |||||||| ||||| || ||||| |||||| ||||||      || || |||      | |   |      | |  || ||||      |  | | |  |||| ||  ||| |||||||  ||   ||  ||   |          
CAGAGAGAATGGACTGCAAACGATACTTGAGTCCAAAGGACATTGTTGAAGGCTCACCAAATTTAAATCTTGCATTTGTTGCTCAAATATTCCATCAAAGgtgggaaatgaatagtgtcagcttattgacattttgagacttcgtagaaatccctttttgttcttccttttctatttggctggtagtgtcatag-cagcta----------