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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGAGGGATGCACACCCTTATACGAGATTCTCAGACAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTGgtaggattattaaagctcatttaaatggctgaccaaattctcctatcacgtctcatttctgttgtctgagtttttttcttatatttatcag

Basic information

species Arabidopsis thaliana
transcript AT4G26510.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 9
ATAAGAGGGATGCACACCCTTATACGAGATTCTCAGACAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTGgtaggattattaaagctcatttaaatggctga-ccaaattctcctatcacgtctcatttctgttgt--ctgagtttttttcttatattt-atcag-
 || | || ||||| ||||| ||||| ||| |  ||||||| || ||||||||||| || || ||||||||||||||| |  ||||  | | |  |    || |||   |  || | |    ||||   ||      |  |||   || |  ||||   |  |   |  | || | ||| 
-TACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTGTATTTTACTCTGATCGATTGATTCGATTGGtgag-taaacaggtttcttttttgtttctaaacttggttctgacatggaagtttcttttaattataactgatcataatatctgcacttgaccagg

upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 9
ATAAGAGGGATGCACACCCTTATACGAGATTCTCAGACAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTGgtagg-attatta---aagctcatttaaatggctgaccaaattctcctatca-cgtctcatttctgttgtctgagtttttttcttatatttatcag-------------
||| | || ||||| || |||||||| ||| |||| ||||| || |||||||||||||| ||| |||| || |||||| |  |||| || ||||||    |    || ||   |   |    || ||||    |          ||||| || | ||  |  ||   |||| |    |               
ATACGGGGTATGCATACACTTATACGTGATGCTCAAACAACAAAGCATGATTTTGTCTTTTATGCTGACCGGTTGATTCGTTTGgtgggtattatttcctagagccacttggttcatttgataacttcttgacttggtagtgggtttcttttatttggttgattcatttatctagtcccttgtatctttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164188773|gb|ES024378.1|ES024378
EST:     CAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTG                         GTTGTAGAACATGGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATT
genomic: CAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTGgtaggattat ... tatttatcagGTTGTAGAACATGGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATT