1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTTGCACACGGCTGGAGAATACACCCATCTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAAgtaatcacattttcttaaacatgattaagtgatttgttgtttctcctaatagcatctctaaactgctatatatatatatgaattttattacag
species | Arabidopsis thaliana |
transcript | AT4G26260.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAA CAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGTEST: gi|116471598|gb|EG514190.1|EG514190
genomic: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAAgtaatcacat ... tttattacagCAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGT
EST: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAA CAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGTEST: gi|116471597|gb|EG514189.1|EG514189
genomic: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAAgtaatcacat ... tttattacagCAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGT
EST: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAA CAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGT
genomic: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAAgtaatcacat ... tttattacagCAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGCACACGGCTGGAGAATACACCCATCTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAAgtaatcacattttcttaaacatgattaagtgatttgttgtttctcctaatagcatctctaaactgctatatatatatatgaattttattacag
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG