1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGATGAGAAGCTGGAAGGAGACGCAGCTTTGAACAAATTCTTCCGGGAGATATACCAGAATGCGGATGAGGATATGAGGCGAGCGATGAGCAAATCATTTgtgagtatctcttttcatggagtactgtaaaagttttgtccttttgatcgactcatttatggttttcgggttttgaacaatgagcag
species | Arabidopsis thaliana |
transcript | AT4G23570.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TATACCAGAATGCGGATGAGGATATGAGGCGAGCGATGAGCAAATCATTT GTGGAATCGAATGGGACAGTGCTGTCAACAAACTGGCAAGAGGTTGGGACTEST: gi|124762530|gb|EH852660.1|EH852660
genomic: TATACCAGAATGCGGATGAGGATATGAGGCGAGCGATGAGCAAATCATTTgtgagtatct ... caatgagcagGTGGAATCGAATGGGACAGTGCTGTCAACAAACTGGCAAGAGGTTGGGACT
EST: TGAGGCGAGCGATGAGCAAATCATTT GTGGAATCGAATGGGACAGTGCTGTCAACAAACTGGEST: gi|125317185|gb|EL331270.1|EL331270
genomic: TGAGGCGAGCGATGAGCAAATCATTTgtgagtatct ... caatgagcagGTGGAATCGAATGGGACAGTGCTGTCAACAAACTGG
EST: ATACCAGAATGTCGGATGAGGATATGAGGCGAGCGATGAGCAAATCATTT GTGGAATCGAATGGGACAGTGEST: gi|125012260|gb|EL084529.1|EL084529
genomic: ATACCAGAATG-CGGATGAGGATATGAGGCGAGCGATGAGCAAATCATTTgtgagtatct ... caatgagcagGTGGAATCGAATGGGACAGTG
EST: CGAGCGATGAGCAAATCATTT GTGGAATCGAATGGGACAGTGCTGTCAACAAACTGGCAAGAGGTTGGGACT
genomic: CGAGCGATGAGCAAATCATTTgtgagtatct ... caatgagcagGTGGAATCGAATGGGACAGTGCTGTCAACAAACTGGCAAGAGGTTGGGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGAGAAGCTGGAAGGAGACGCAGCTTTGAACAAATTCTTCCGGGAGATATACCAGAATGCGGATGAGGATATGAGGCGAGCGATGAGCAAATCATTTgtgagtatctcttttcatggagtactgtaaaagttttgtccttttgatcgactcatttatggttttcgggttttgaacaatgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT