1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGTTTCACAGAGGCCAGCTTATCCATCTTCTAAGAAAGTTAAGGACTGGGACAAGCTGGAAGCTGAAGTGAAGAAGCAGgtccgtctcttaccatgtacttaaaacctcgaccaaacggttttgttttttctcttcttttgtttgattgtggttgacttgcag
species | Arabidopsis thaliana |
transcript | AT4G23570.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTAAGAAAGTTAAGGACTGGGACAAGCTGGAAGCTGAAGTGAAGAAGCAG GAAAAAGATGAGAAGCTGGAAGGAGACGCAGCTTTGAACAAATTCTTCCGGEST: gi|125062800|gb|EL131008.1|EL131008
genomic: CTAAGAAAGTTAAGGACTGGGACAAGCTGGAAGCTGAAGTGAAGAAGCAGgtccgtctct ... tgacttgcagGAAAAAGATGAGAAGCTGGAAGGAGACGCAGCTTTGAACAAATTCTTCCGG
EST: AAGTTAAGGACTGGGACAAGCTGGAAGCTGAAGTGAAGAAGCAG GAAAAAGATGAGAAGCTGGAAGGAGACGCAGCTTTGAACAAATTCTTCCGG
genomic: AAGTTAAGGACTGGGACAAGCTGGAAGCTGAAGTGAAGAAGCAGgtccgtctct ... tgacttgcagGAAAAAGATGAGAAGCTGGAAGGAGACGCAGCTTTGAACAAATTCTTCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTTTCACAGAGGCCAGCTTATCCATCTTCTAAGAAAGTTAAGGACTGGGACAAGCTGGAAGCTGAAGTGAAGAAGCAGgtccgtctcttaccatgtacttaaaacctcgaccaaacggttttgttttttctcttcttttgtttgattgtggttgacttgcag
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC