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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTTGGTGATAGTATTCCCGGACATGGCGGAATTACAGATAGAATGGATTGTCAGgtatataggcgcattgacttcaatacattcttattactttcttaaagactttcaaacatcactatggtttagaactgtattagatctgatatgatatgtcttttgggtttctag

Basic information

species Arabidopsis thaliana
transcript AT4G22340.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22340.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 10
GACTTTGGTGATAGTATTCCCGGACATGGCGGAATTACAGATAGAATGGATTGTCAGgtatataggcgcattgacttcaatacattcttattactttcttaaagactttcaaacatcactatggtttagaactgtattagatctgatatgatatgtcttttgggtttctag
|||||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||| ||       ||||  |   | || |||    | ||  || ||  | || | |  | ||||    | || ||| |  ||  | |  | |  |   | |       || || 
GACTTTGGTGATAGTATTCCGGGACATGGTGGAATTACCGACAGAATGGATTGCCAGgtagat---tcttttgatgt---tgcaatctacaaatttattttaaatcattaatatttaactac---tcaggactct--tatgttt--ttttgtccttgtgggaaactttta-

upper sequence: AT4G22340.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G32660.1 (Glycine max), 5'ss of exon 9
-------------------------------------------GACTTTGGTGATAGTATTCCCGGACATGGCGGAATTACAGATAGAATGGATTGTCAGgtatataggcgcattgacttcaatacattcttattactttcttaaagactttcaaacatcactatggtttagaactgtattagatctgatatgatatgtcttttgggtttctag
                                           |||||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||| ||       ||||  |   | || |||    | ||  || ||  | || | |  | ||||    | || ||| |  ||  | |  | |  |   | |       || || 
GGTCAGGTAGAAACAGACTTGCTGTGTGTTTCCATTTTTGCAGGACTTTGGTGATAGTATTCCGGGACATGGTGGAATTACCGACAGAATGGATTGCCAGgtagat---tcttttgatgt---tgcaatctacaaatttattttaaatcattaatatttaactac---tcaggactct--tatgttt--ttttgtccttgtgggaaactttta-

upper sequence: AT4G22340.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA20G34940.1 (Glycine max), 5'ss of exon 10
GACTTTGGTGATAGTATTCCCGGACATGGCGGAATTACAGATAGAATGGATTGTCAGgtatataggcgcattgacttcaatacattcttattactttcttaaagactttcaaacatcactatggtttagaactgtattagatctgata--tgatatgtcttttgggtttctag
|| ||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||| ||       ||||  |   |||| ||| |  | |||       | |||||| ||| |  |    || | ||| |||    | |  |   ||    |   |||   |    | 
GATTTTGGTGATAGTATTCCAGGACATGGTGGAATTACCGACAGAATGGATTGCCAGgtagat---tcttttgatgt---tacaatct-acaaattt-------attttcaatcatta--actacttgggactctatgcttttttgtccttgtggggaacttttaatcatcat