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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAGgtaaagggtacgactaaatgtcagaatctctccaagcttttttatccttcgttatctcactgaagcatgagtcttacacttttcttctag

Basic information

species Arabidopsis thaliana
transcript AT4G18810.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064609|gb|DR360366.1|DR360366
EST:     GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG                         AACTTTCCCGAGGCGGAGAATGTCTCTGCATATGATGGTCTAGAGCTAAGA
genomic: GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAGgtaaagggta ... tttcttctagAACTTTCCCGAGGCGGAGAATGTCTCTGCATATGATGGTCTAGAGCTAAGA
EST: gi|124920463|gb|EH994175.1|EH994175
EST:     GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG                         AACTTTCCCGAGGCGGAGAATGTCTCTGCATATGATGGTCTAGAGCTAAGA
genomic: GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAGgtaaagggta ... tttcttctagAACTTTCCCGAGGCGGAGAATGTCTCTGCATATGATGGTCTAGAGCTAAGA
EST: gi|125254676|gb|EL268761.1|EL268761
EST:     CAAATAATGGCGGATTTACGAGTGTCCGAACCAAG                         AACTTTCCCGAGGCGGAGAATGTCTCTG
genomic: CAAATAATGGCGGATTTACGAGTGTCCGAACCAAGgtaaagggta ... tttcttctagAACTTTCCCGAGGCGGAGAATGTCTCTG
EST: gi|86064608|gb|DR360365.1|DR360365
EST:     GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG                         AACTTTCCCGAGGCGGAGAATGTCTCTGCATATGATGGTCTAGAGCTAAGA
genomic: GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAGgtaaagggta ... tttcttctagAACTTTCCCGAGGCGGAGAATGTCTCTGCATATGATGGTCTAGAGCTAAGA