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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAGATCTTGTTCATGGGTAGTTCATTTCAAGAAGTTGCTCATATCGCTAATGGCTCACATCTTGGAAATAGCATCTCTCTTCTTCGGATCAATgttagtgattgattcaaaatcccaacaaaaaaaaaaatcgaattttgattttaaaacttaaaaagtttggtttttgaattacag

Basic information

species Arabidopsis thaliana
transcript AT4G17710.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA01G01850.1 (Glycine max), 5'ss of exon 10
CTGGAGATCTTGTTCATGGGTAGTTCATTTCAAGAAGTTGCTCATATCGCTAATGGCTCACATCTTGGAAATAGCATCTCTCTTCTTCGGATCAATgttagtgattgattcaaaatccc--aacaaaaaaaaaaatcgaattttgattttaaaacttaaaaagtttggtttttgaattacag--------------
 |||| |   | |  |  || |  |||||  | ||||| |||||||| || |||||||||||||  |||||  |||| ||||||||||| || ||||| ||    |  | |||| |     |  |              |  |    |||      |       |||  | |  |||   ||              
ATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcattttccaaattaatggagtattgttctctggtagaaatcacctttttcctgtccccttcttgtctctccaatagaagaaaaaaaacatatg

upper sequence: AT4G17710.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA09G34070.1 (Glycine max), 5'ss of exon 10
CTGGAGATCTTGTTCATGGGTAGTTCATTTCAAGAAGTTGCTCATATCGCTAATGGCTCACATCTTGGAAATAGCATCTCTCTTCTTCGGATCAATgttag-----tgattgattcaa---aatcccaacaaaaaaaaaaatcgaattttgattttaaaacttaaaaagtttggtttttgaattacag--------
 ||||     | | ||  || |  |||||  | ||||| |||||||| || |||||||||||||  |||||  |||| ||||||||||| || ||||| ||     ||   || | ||   | |           | | ||   |  |||     |    | |       |    | | |||  | |         
ATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcattgtccgaattaatggagtattgttctctgatagaaatcacctttttccctgtccccttcttgtctctcctatagaagaaaaaaatatgtg