1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATAAAGAAAATTGAGCTCAATGACGATGGCACGGTTAAGAGTTTCTTACTCACTAATGGAAGCACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAGgtttactaccatgctgtcttgtgggtttaacaattcatctggtatcctgcttattaatatgttgtttatgtttttcttgtag
species | Arabidopsis thaliana |
transcript | AT4G14210.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CACTAATGGAAGCACTGTCGAGGGAGACGCTTATGTGTTTGCCGCTCCAG TCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACTEST: gi|86074018|gb|DR369775.1|DR369775
genomic: CACTAATGGAAGCACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAGgtttactacc ... tttcttgtagTCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACT
EST: CACTAATGGAAGCACTGTCGAGGGAGACGCTTATGTGTTTGCCGCTCCAG TCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACTEST: gi|86074021|gb|DR369778.1|DR369778
genomic: CACTAATGGAAGCACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAGgtttactacc ... tttcttgtagTCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACT
EST: CACTAATGGAAGCACTGTCGAGGGAGACGCTTATGTGTTTGCCGCTCCAG TCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACTEST: gi|124753441|gb|EH843571.1|EH843571
genomic: CACTAATGGAAGCACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAGgtttactacc ... tttcttgtagTCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACT
EST: CACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAG TCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAAGAAATACCGTACEST: gi|116473797|gb|EG516389.1|EG516389
genomic: CACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAGgtttactacc ... tttcttgtagTCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAA-GAAATACCGTAC
EST: CACTAATGGAAGCACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAG TCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACTEST: gi|86074020|gb|DR369777.1|DR369777
genomic: CACTAATGGAAGCACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAGgtttactacc ... tttcttgtagTCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACT
EST: CACTAATGGAAGCACTGTCGAGGGAGACGCTTATGTGTTTGCCGCTCCAG TCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACT
genomic: CACTAATGGAAGCACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAGgtttactacc ... tttcttgtagTCGATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAAGAAAATTGAGCTCAATGACGATGGCACGGTTAAGAGTTTCTTACTCACTAATGGAAGCACTGTCGAAGGAGACGCTTATGTGTTTGCCGCTCCAGgtttactaccatgctgtcttgtgggtttaacaattcatctggtatcctgcttattaatatgttgtttatgtttttcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA