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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAACAACTGGTGACCCGAAGGGAGTTATGATTTCAAATGAAAGCATTGTTACTATAACTACTGGAGTGATGCATTTCCTAGGGAATGTGAATGCAAGCgtgagttttatttcatttgtcatgatttcacatgaagcgacagtttttaagttttaagttgtactgaattttgcaaaacaaatcag

Basic information

species Arabidopsis thaliana
transcript AT4G11030.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11030.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 9
CGGAACAACTGGTGACCCGAAGGGAGTTATGATTTCAAATGAAAGCATTGTTACTATAACTACTGGAGTGATGCATTTCCTAGGGAATGTGAATGCAAGCgtgagttttatt-tcatttgtcatgatttca-catga-agcgacagtttttaagttttaagttgtact---gaattttgcaaaacaaatcag--------
 |||||||| |||||||| || || || |||||||| |||||||||||||||||| | | | |||| |||| ||   | |||  || ||| |||| |   |||| || | || ||||||    | || |||  ||   | | ||||  |  | |  |  |    || |   |||||||          ||          
TGGAACAACCGGTGACCCCAAAGGTGTGATGATTTCCAATGAAAGCATTGTTACTCTTATTGCTGGGGTGAAGCGCCTGCTACAGAGTGTCAATGAAGAGgtgatttcttttctcatttcaagttatctcagtatctcatcaacagaatacacggatagaaagatagttgggaattttaagctttgtttcttcattatct