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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACCCAGgtaacttgctttgtttcctctaatcctagcaaatgcaaggaatcttcagttatctatctgatcttcaccattgtcctcttgttgtcag

Basic information

species Arabidopsis thaliana
transcript AT4G05520.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G065012_T03 (Zea mays), 5'ss of exon 9
AGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACCCAGgtaacttgctttgtttcctctaatcctagcaaatgcaaggaatcttcagtt--atctatctgatcttcaccattgtcc-----tcttgttgt-cag
|| |||||||| ||||| || |||||||| ||||| ||||||||||| ||||| || ||||||||||| ||||| || || ||   |      || |||||| |     |    |   || |  | | |    || |    ||| | | ||  | | | ||    || |||| | ||       ||  |||| |||
AGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATACTCCACGGGGAAAACAACATTCATAAAGCATTTACTAAAAACAAGTTATCCAGgtgaaacaataacatggatc-acccattgttcttgtatcccatcattactttgaacaaactttaatttaccagtatctgcaatactccttgtgcag

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA09G01160.1 (Glycine max), 5'ss of exon 7
AGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACCCAGgtaacttgctttgtttcc--tctaatcctagcaaatgcaaggaat-cttcagttatctatctgat------cttcaccattgtcctcttgttgtcag
|  |  ||||||||||| ||||||||||| |||||| | ||||||||||| || |||||||| |||||||||||||| ||| |   |||||| || |||||||  ||   || ||  |  |||| || |    | || |   | | ||||| | ||  |  ||||       |    |||  ||||     |||   
AACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgtaggttaagttcttgacaatctactcattaacattgtagtaatttcttcattgataaaattgatgactgattgattcatgatcctgactctgtag-

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA15G11970.1 (Glycine max), 5'ss of exon 8
AGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACCCAGgtaacttgctttgtttcct--ctaatcctagcaaatgcaaggaat-cttcagttatctatctgatcttcaccattgtcctcttgttgtcag------------
|  |  ||||||||||| ||||||||||| |||||| | ||||||||||| || |||||||| |||||||||||||| ||| |   |||||| || |||||||  ||   || ||  ||  ||| || |    | || |   | | ||||| | ||  |  ||||   |   ||||   || || ||  |             
AACACTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACATTTATAAAACATTTGTTAAAATGTGATTATCCAGgtaggttaagttcttgactatctactcatttacattgtagtaatttcttcattcataaaattgatgaccgg-attgat-tcatgatgctaactctttgtgtag

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA17G01310.1 (Glycine max), 5'ss of exon 9
AGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACCCAGgtaacttgctttgtttcctctaatcctagcaa------atgcaaggaatcttcagtt-atctatctgatcttcaccattgtcctcttgttgtcag----------------
|  || ||||||||||| ||||||||||| |||||  | |||||||||||||| || |||||||| ||||||||||| || ||  ||||||| || ||||||   ||  |||||      || |  | | ||      ||||||  | | | || |  |   || | |  | |   ||||  |  ||||   |                  
AACAGTGATTTTGATGCTAAACCAATGGTCATGCTCCTTGGTCAATATTCCACTGGGAAAACAACCTTTATAAAACATTTACTAAGATGTGATTATCCAGgttggttaatttgtagataatattatttgaaatccttcatgcaaaaagtatacaatcgagggatataaattactttattgatcatttgtcaccttttaattcttcacacag

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA07G39450.1 (Glycine max), 5'ss of exon 9
AGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACCCAGgtaacttgctttgt--------ttcc---tctaatcctagcaa------atgcaaggaatcttcagtt-atctatctgatcttcaccattgtcctcttgttgtcag----------------
|  || ||||||||||| ||||||||||| |||||  | |||||||||||||| || |||||||| || |||||||| || ||  ||||||| || ||||||   ||  ||| |        | ||   |  | |  | | ||      ||||||  | | |    |  |   ||   |  | |   | ||  |  ||||   |                  
AACAGTGATTTTGATGCTAAACCAATGGTCATGCTCCTTGGTCAATATTCCACAGGGAAAACAACCTTCATAAAACATTTACTAAGATGTGATTATCCAGgttggttaatttttagataatgtaccagatgcattatttgaaatcattcatgcaaaaagtataggatcgagggatacaagttactttaatgatcatttgtcaccttttaattcttcacacag

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 10
AGTAGCGATTTTGATGCCAAACCAATGGTAATGCTTTTGGGTCAATATTCCACCGGAAAAACAACATTTATAAAACACTTGCTCGGATGTGACTACCCAGgtaacttg---ctttgtttcctctaatcc---tagcaaatgcaaggaatcttcagttatctatctgatc--ttcaccattgtcctcttgttgt-cag
  ||| || |||||||||||||| ||||| |||||||||||||| ||||| || || ||||| ||||| |||||||| || ||||||||| | | ||||||||| |      | ||||||   |  |||   |  ||  | |||  | |    |   || |   |  |    | || |||  | |||| |||   ||
CATAGTGACTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAGTATTCAACTGGGAAAACTACATTCATAAAACATTTACTCGGATGTAATTTCCCAGgtaagtaaactttctgtttctgttcttccctttttcagttacaactagttgagaacaatttcgtttcttggcttactatttccttctttttggatag