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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATGCTGATAAAAAGAATTGGGTTAATTTCCAGCAACGCGTAGACAAAGCCCCTGAACAAGTTCTGAGgtgtgattcaaacgcttatgattttctgcatacttttgatcttgattctcccataacatcgatttgtgaaatacgtattgatacag

Basic information

species Arabidopsis thaliana
transcript AT4G02220.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164148005|gb|ES122437.1|ES122437
EST:     TGGGTTAATTTCCAGCAACGCGTAGACAAAGCCCCTGAACAAGTTCTGAG                         ATATTCCCAGAGCTC
genomic: TGGGTTAATTTCCAGCAACGCGTAGACAAAGCCCCTGAACAAGTTCTGAGgtgtgattca ... attgatacagATATTCCCGGAGCTC
EST: gi|164143132|gb|ES073447.1|ES073447
EST:     TGGGTTAATTTCCAGCAACGCGTAGACAAAGCCCCTGAACAAGTTCTGAG                         ATATTCCCAGAGCTC
genomic: TGGGTTAATTTCCAGCAACGCGTAGACAAAGCCCCTGAACAAGTTCTGAGgtgtgattca ... attgatacagATATTCCCGGAGCTC
EST: gi|116429555|gb|EG472147.1|EG472147
EST:     TGGGTTAATTTCCAGCAACGCGTAGACAAAGCCCCTGAACAAGTTTTGAG                         ATATTCCCGGAGCTCTGGTGCTAAACCCCTTTGGCCAATAGCAAGCGGACG
genomic: TGGGTTAATTTCCAGCAACGCGTAGACAAAGCCCCTGAACAAGTTCTGAGgtgtgattca ... attgatacagATATTCCCGGAGCTCTGGTGCTAAACCCCTTTGGCCAATAGCAAGCGGACG