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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGAACCGGTCAACCTTTATGCATATATGAACCCTATTTTGGTGAAGGAACCTGGTCGTTTCTACATCAAGATCCCCTCTATCGTGGGGTTGGCCTGgtgagtttccatgtgcaatatagtgtttttgcaaccataagatggtccaaaggagagaaattgttctcaactgatttgaatgtatcatattgcag

Basic information

species Arabidopsis thaliana
transcript AT4G01210.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA16G03340.1 (Glycine max), 5'ss of exon 9
GCTAAGAACCGGTCAACCTTTATGCATATATGAACCCTATTTTGGTGAAGGAACCTGGTCGTTTCTACATCAAGATCCCCTCTATCGTGGGGTTGGCCTGgtgagtt-------tccatgtgcaatatagtgtttttgcaacca--taagatggtccaaaggagagaaattgttctcaa-ctgatttga--atgtatcatat---tgcag
     | || || |||||  ||||||| |||||||| |||||||| |||||| ||||||| |||||||||||| |  | || ||||| ||  |||||||||| ||||           | |    | || |  || |||   |   | |||   |  || |    |    || | |||| |||||   |  |||||    ||   |||||
TGAGCGGACAGGACAACCGCTATGCATTTATGAACCTTATTTTGGGGAAGGATCCTGGTCTTTTCTACATCAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttgtgtgtgcttgtattttctgtaatagttgtgctttctattcagaacttataatgagtggcttctgatttcaatctgatgcaatgatgtactggatgtttgcag

upper sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA07G06780.1 (Glycine max), 5'ss of exon 9
GCTAAGAACCGGTCAACCTTTATGCATATATGAACCCTATTTTGGTGAAGGAACCTGGTCGTTTCTACATCAAGATCCCCTCTATCGTGGGGTTGGCCTGgtgagtt---tccatgtgcaatatagtgtttttgcaaccataagatggtccaaaggagagaaattgttctcaactgatttgaatgtatcatattgcag----
     | || || |||||  |||||||||||||||| |||||||| |||||| ||||| | ||||||||| || |  | || ||||| ||  |||||||||| ||||   |     |||| | |  | ||  | ||    |      || || | || |  |  | ||||   ||  | |      |     |||  |    
TGAGCGGACAGGACAACCGCTATGCATATATGAACCTTATTTTGGGGAAGGATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttgggtgtgcttgcattttcatattaatcca--tgttttccagtgcatatgataatatattttctggtcttgtgtatgaaaaaggctttgttgggag