1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATTCATGCCTTGAAGCCATTTAAAGCTGCCGCCGATCTTTTGGCCAAGAAAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTGCAGAATAACAAGgtctgtttcagaatcttgatcgttctttcatatggatcaaataattttactctgtttcacatgatttctttttgtag
species | Arabidopsis thaliana |
transcript | AT3G61540.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTGCAGAATAACAAG GTGCCTGTTGCTGCAGCGGTTTACTACGAAGATATGTATGTAAACTTCAAGEST: gi|86088282|gb|DR384041.1|DR384041
genomic: AAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTGCAGAATAACAAGgtctgtttca ... ctttttgtagGTGCCTGTTGCTGCAGCGGTTTACTACGAAGATATGTATGTAAACTTCAAG
EST: AAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTGCAGAATAACAAG GTGCCTGTTGCTGCAGCGGTTTACTACGAAGATATGTATGTAAACTTCAAG
genomic: AAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTGCAGAATAACAAGgtctgtttca ... ctttttgtagGTGCCTGTTGCTGCAGCGGTTTACTACGAAGATATGTATGTAAACTTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCATGCCTTGAAGCCATTTAAAGCTGCCGCCGATCTTTTGGCCAAGAAAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTGCAGAATAACAAGgtctgtttcagaatcttgatcgttctttcatatggatcaaataattttactctgtttcacatgatttctttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT