1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTCACCAATAAGAAGAAAGGGCTGACGAGTCATTGTTACAGAATCGTGTTCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGgtaatcacttttgcttctcctttcatcattaacatgtaagatattcaaaaccgtttcatagacaaaatgaaattttccaaatcgtgatagcaagatagaattggttgtgtatatgttgttagtgttaaatgtgttgaaatggtgacttatcgaaatgcag
species | Arabidopsis thaliana |
transcript | AT3G58140.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCCGTTCCATGGGGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAG AGTAAAGTGCGTGATGAGEST: gi|125263828|gb|EL277913.1|EL277913
genomic: TCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGgtaatcactt ... cgaaatgcagAGTAAAGTGCGTGATGAG
EST: TGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAG AGTAAAGTGCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTGAEST: gi|116411244|gb|EG453836.1|EG453836
genomic: TGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGgtaatcactt ... cgaaatgcagAGTAAAGTGCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTGA
EST: TCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAG AGTAAAGTGCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTGAEST: gi|164059491|gb|ES033950.1|ES033950
genomic: TCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGgtaatcactt ... cgaaatgcagAGTAAAGTGCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTGA
EST: TCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAG AGTAAAGTGCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTG
genomic: TCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGgtaatcactt ... cgaaatgcagAGTAAAGTGCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCACCAATAAGAAGAAAGGGCTGACGAGTCATTGTTACAGAATCGTGTTCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGgtaatcacttttgcttctcctttcatcattaacatgtaagatattcaaaaccgtttcatagacaaaatgaaattttccaaatcgtgatagcaagatagaattggttgtgtatatgttgttagtgttaaatgtgttgaaatggtgacttatcgaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG