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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCGTCTGAATATATCAAAATACCTGATTATAAGgtgagcaatcaatcatctccaagctggactcatttattttcatggctaatatgatatccatccatgaaggaacttgtataactcttgacccttttcctatgtgtggtcatgaaaatctag

Basic information

species Arabidopsis thaliana
transcript AT3G53570.4
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA03G33100.1 (Glycine max), 5'ss of exon 7
ATATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCGTCTGAATATATCAAAATACCTGATTATAAGgtgagcaatcaatcatctccaagctggactcatt-tattttcatggctaatatgatatccatccatgaaggaactt-gtataactc--ttgacccttttcctatgtgtggtcatgaaaatctag
 ||||||||||||| |  |||| ||||| ||||||||||| |||||||||||| |  | || || ||||  || ||| | || || ||||||||     |||| || |||  |   |   |  | | |  | |||   |||   |||      |  || |  ||  || | |  |  |  |||    ||| | ||||||                 
TTATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAACATTCTTCTTATTTCATCAGAATTCATTAAAGTGCCAGACTATAAGgt-----atca-tcttcttaattattctcctactatcctgtcagtactagc-tgaggggtgtaaataagtgacttttggaccatgcaattgcaattttccttatgtg-----------------

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv08s0040g02640.t01 (Vitis vinifera), 5'ss of exon 7
ATATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCGTCTGAATATATCAAAATACCTGATTATAAGgtga-gcaatcaatcatctccaagctggactcatttattttcatggctaatatgatatccatccatgaaggaacttgtataactcttgacccttttcctatgtgtggtcatgaaaatctag
 ||||||||||||||| || |||||||| ||| ||||||| || || |||||| | || || || || || |||||| | || |||||||||||   || |   || |     ||  ||   |  ||||| | ||| | |    ||||     |   |      || ||| |     |  ||  ||   | |                     
TTATGCATGATTTACGCCTTATCCACACTGATCTGAAGCCAGAAAATATTCTTCTTGTTTCTTCAGATTACATCAAAGTGCCAGATTATAAGgtattgcgac--attaaaaaaaaaatgctattgtttatatccatagtttcattgatgattttgtgtatgttcacatgtgtgttattacactattgaacaact-------------------

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ11461 (Selaginella moellendorffii), 5'ss of exon 6
ATATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCGTCTGAATATATCAAAATACCTGATTATAAGgtgagcaatcaatcatctccaagctggactcatttattttcatggctaatatgatatccatccatgaaggaacttgtataactcttgacccttttcctatgtgtggtcatgaaaatctag
| ||||| ||| |    || ||||||||||||||||||||||| ||||||||  | || ||  | ||  || ||||| | || || |  ||||||||   |   |||  ||   | | | | |  || |   |  |    ||                                                                      
ACATGCACGATCTTACTCTTATCCACACGGATTTGAAGCCGGAAAACATTCTGCTCGTGTCTCCAGATCATGTCAAAGTCCCCGACTTCAAGgtgaggttt---tcacttctttgtttgtcgctcttgtaaccgagaaccattcag------------------------------------------------------------------

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ18766 (Selaginella moellendorffii), 5'ss of exon 6
ATATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCGTCTGAATATATCAAAATACCTGATTATAAGgtgagcaatcaatcatctccaagctggactcatttattttcatggctaatatgatatccatccatgaaggaacttgtataactcttgacccttttcctatgtgtggtcatgaaaatctag
| ||||| ||| |    || ||||||||||||||||||||||| ||||||||  | || ||  | ||  || ||||| | || || |  ||||||||   |   |||  ||   | | |      |   | |  |  |  |   || | |||| ||                                                        
ACATGCACGATCTTACTCTTATCCACACGGATTTGAAGCCGGAAAACATTCTGCTCGTGTCTCCAGATCATGTCAAAGTCCCCGACTTCAAGgtgagattt---tcacttctttgtttg------tcgctcttgtaaccgaaccgagaaccattcag-------------------------------------------------------