Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAATTGAACTCAAACCCGGTGGGAAGGATACTTCAGTCACGAATGAGAACAAAATGCAATATATTCATGCAATGGCTGACTATAAACTTAACCGGCAGgtatcgtctttttaacgttttataaataatcttaaggtcaatcatcctgcaaaacaaaagttacttcataattaatgaggtaaacatgttgtcctatgtcttgtctccaatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G53090.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53090.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 10
CATAATTGAACTCAAACCCGGTGGGAAGGATACTTCAGTCACGAATGAGAACAAAATGCAATATATTCATGCAATGGCTGACTATAAACTTAACCGGCAGgtatcgtctt--tttaacgttttataaataatcttaaggtcaatcatcctgcaaaacaaaagttacttcataattaatgaggtaaacatgttgtcctatgtcttgtctccaatgcag
  |  | ||||| ||  ||||||| || |||| ||| || || ||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||  ||||| |   | |  ||||  ||  |||||      |  |||| | |    ||| |  ||    ||||  ||||   ||   | || |  ||||||   | ||                 
TGTGGTGGAACTTAAGTCCGGTGGCAAAGATATTTCTGTGACAAATGAGAACAAGATGCAGTACATACATGCAATGGCAGACTACAAACTCAACCAACAGgttttaccatcatttactgtagtataa------tgcaggttattt---ctgtattacct--gttatatcatgtgtatatatgtgacaatgttgaaat-tgcag--------------

upper sequence: AT3G53090.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 9
CATAATTGAACTCAAACCCGGTGGGAAGGATACTTCAGTCACGAATGAGAACAAAATGCAATATATTCATGCAATGGCTGACTATAAACTTAACCGGCAGgtatcgtct----ttttaacgttttataaa------taatcttaa--ggtcaatcatcctg-caaaacaaaagttacttcata-attaatgaggtaaacatgttgtcctatgtct-tgtctccaatgcag
||| ||||| |||||||| ||||| |||||| |    || || |||||||||||  |||| ||| | ||||| ||||| ||||||||||||||||||||||| | ||      |||  |  || | || |      || |  |||  | |  | | |  |  ||| |   || | | || ||    |     | ||||  |    |||  ||||  ||| |  | |||||
CATTATTGAGCTCAAACCTGGTGGCAAGGATGCCATTGTGACCAATGAGAACAAGTTGCAGTATGTCCATGCTATGGCAGACTATAAACTTAACCGGCAGgtgtagtgcacaatttggaaattctgtagacctatctatttataacagatttaccttgttatcaatattgaattgaatttatctgcttccatgctaaattttccttccactgtcaatgtttgaattgcag

upper sequence: AT3G53090.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S103_43V6.1 (Physcomitrella patens), 5'ss of exon 11
CATAATTGAACTCAAACCCGGTGGGAAGGATACTTCAGTCACGAATGAGAACAAAATGCAATATATTCATGCAATGGCTGACTATAAACTTAACCGGCAGgtatcgtctttttaacgttttataaataatcttaaggtcaatcat--cctgcaaaacaaaagtta-cttcataatta-atgaggtaaacatgttgtcct--atgtcttgtctccaatgcag-------------------------------------------
 |   | ||  |   ||| |||||    || |   | || || || || |||||| |||| ||| ||||||| ||||||||||| |||||||||| |||||||     |     | || ||   | |    |  |    | || |    | |  ||  | |  |  |    |||||   | || | |   ||||||| |   |   |  | |   |  |                                             
TACTGTGGAGTTGCGACCTGGTGGTGCAGACATCCCTGTAACAAACGAAAACAAACTGCAGTATGTTCATGCTATGGCTGACTACAAACTTAACCAGCAGgta--agttgaaccatgtgtttccacttggttcgatccaattcttagtttccgtaattagatctggcactctaattctgtcagtttagactgttgtcttcagtacatgattttttagactatttgcattgagtggtactgtaagtaatcgtttcattattgcag