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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTACCTATGTTGATCTCAAGgttagttagttttttaactaactcttaaccttaatatatacagtttggtattgagtctttgcctttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G46590.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124763000|gb|EH853130.1|EH853130
EST:     TCGTACCTATGTTGATCTCAAG                         GATAAGTGGAAGACGCTGGTCCACACGGCAAGGATATCTCCACAACAGCGG
genomic: TCGTACCTATGTTGATCTCAAGgttagttagt ... gcctttgtagGATAAGTGGAAGACGCTGGTCCACACGGCAAGGATATCTCCACAACAGCGG
EST: gi|116485643|gb|EG528235.1|EG528235
EST:     AGGTTCGTGCTTTCGAGGACGCAGACCATCGTACCTATGTTGATCTCAAG                         GATAAGTGGAAGACGCTGGTCCACACGGCAAGGATATCTCCACAACAGCGG
genomic: AGGTTCGTGCTTTCGAGGACGCAGACCATCGTACCTATGTTGATCTCAAGgttagttagt ... gcctttgtagGATAAGTGGAAGACGCTGGTCCACACGGCAAGGATATCTCCACAACAGCGG