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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGGgtaaaaaaaaacctcaagctactgaaatattttggtgctttgttgtgccgttgagactatatagttactgaagtaaaaacgtctttcatgtgcttctgttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G26670.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 10
CTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGGgtaaaaaaaaacctcaagcta-------ctgaaatattttggtgctttgttgtgccgttgagactatatag-ttactgaagtaaaaacgtctttcatgtgc-ttctgttgcag------------------
 || ||| |  |  || |||| ||||| | | | |||||  ||||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||||        ||   |  |        ||      |||     |||||  ||  |||  ||     ||  ||  |||||| ||    |     |||||  | ||    | |                  
TTCTAACCTATTACGACTGGCTATGTCCAATGGTTATCAGTTGCACAGCTGGTTCACATATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGGgtaaggctttttctttggtaaagattctttgttgggctttatcaatttgtgctgatgttttgatggggtaactttttgaagttaatttatgacaaatgtgaatgctaacccggtcttttccaattgtgcag

upper sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 10
CTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGGgtaaaaaaaaacctcaagcta-------ctgaaatattttggtgctttgttgtgccgttgagactatatag-ttactgaagtaaaaacgtctttcatgtgc-ttctgttgcag------------------
 || ||| |  |  || ||||  |||| | | | |||||  |||||||||||||||| || || ||||||||||||||||||||||| || ||||| |||||||        ||   |  |        ||      |||     |||||  |   |||  ||  |  ||  ||  |||||| ||    |     |||||  | ||   | ||                  
TTCTAACCTATTACGACTGGCTTTGTCCAATGGTTATCAGTTGCACAGCTGGTTCACGTATTCCATGCTTCTTTTATTTCTTAGTACTGCTGGATTTTGGgtaaggctttttcttgggtaaagattctttgttgggctttatcaatttgtgctaatgttttgatgaggtaactttttgaagttaatttttgacaaatgtgaatgctaacgaagccttttccaattgtgcag

upper sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 9
CTCGAACTTGCTGAGATTGGCCATGTCTAGTAGCTATCAACTGCACAGCTGGTTCACATACTCTATGCTTCTTTTATTTCTTAGTACAGCCGGATTCTGGgtaaaaaaaaacctcaagctactgaaatattttggtgctttgttgtgccgttgagactat-atagttactgaagtaaaaacgtctttcatgtgcttctgttgcag
||| ||| ||||||||||||| ||||||||| |||||||  |||| ||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||| |        ||  ||      | | || |    ||    |    ||  |  | | | | ||| |    | | ||  || || ||  |  |         
CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGGTTCACATACTCCATGCTTCTTTGCTTTCTTAGTACAGCTGGATTTTGGgtaaagatctcttgtaacttataaccttctctttgcatgttaaaattaacttttggttgttaaaattaatatgctgagaagctccttgataggaattgaa-----