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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTCGATACTGGGTTTTTCCATGCTGACCCTCATCCTGGAAATATGATCCGTACCCCAGACGGGAAACTAGCCATCCTCGATTTTGgtaatgattgtagttccagttattagtgaaaaattagattcgggtagcacagttgcattcgatgtgatatgagaaaaaactttgttgacatcttatccatgtctgttcgatgacag

Basic information

species Arabidopsis thaliana
transcript AT3G24190.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24190.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os02g57160.1 (Oryza sativa), 5'ss of exon 9
TTGCTCGATACTGGGTTTTTCCATGCTGACCCTCATCCTGGAAATATGATCCGTACCCCAGACGGGAAACTAGCCATCCTCGATTTTGgtaatgattgtagttccagttattagtgaaaaattagattcgggtagcacagttgcattcgatgtgatatgagaaaaaactttgttgacatcttatccatgtctgttcgatgacag
||||| |||||||| |||||||||||||| || |||||||| ||||||||  | || ||||| || |||||||| || || ||||||||| | |     | |     | ||   |   | |      || | ||      || | || | | | |||| | | | ||   |  |   |  |  |     |  |           
TTGCTTGATACTGGATTTTTCCATGCTGATCCACATCCTGGCAATATGATTAGGACACCAGATGGAAAACTAGCTATTCTTGATTTTGgtga-gtcaacattatggataatacttctcacacacagctctgttatt----tttctttggttctcatataaaagacaaaagttatactagttagtttgcatgcg-----------

upper sequence: AT3G24190.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G157369_T01 (Zea mays), 5'ss of exon 9
TTGCTCGATACTGGGTTTTTCCATGCTGACCCTCATCCTGGAAATATGATCCGTACCCCAGACGGGAAACTAGCCATCCTCGATTTTGgtaa--tgatt-gtagttccagttattagtgaaaaattagattcgggtagcacagttgcattcgatgtgatatgagaaaaaactttgttgacatcttatccatgtctgttcgatgacag
||||| ||||||||||| ||||| ||||| || |||||||| ||||||||  | || || || || || || || || || ||||||||||     | | ||||||  |   ||     || || ||  ||   ||   ||  | | |||   | |    |   | |||| | | |  | |  ||||    |               
TTGCTTGATACTGGGTTCTTCCACGCTGATCCACATCCTGGCAATATGATTAGAACACCTGATGGAAAGCTGGCTATTCTTGATTTTGgtatgtcaactagtagtttgaaa-atccacaaataactatttt---gtccaactatggtattttgttttgcttctcataaaattatatataaacattatattag---------------

upper sequence: AT3G24190.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv05s0136g00140.t01 (Vitis vinifera), 5'ss of exon 9
TTGCTCGATACTGGGTTTTTCCATGCTGACCCTCATCCTGGAAATATGATCCGTACCCCAGACGGGAAACTAGCCATCCTCGATTTTGgtaatgattg--tagttccagttat-tagtgaaaaattagattcgggta-gcacagttgcattcgatgtgatatgagaaaaaactttgttgacatcttatccatgtctgttcgatgacag
||||| |||||||| |||||||||||||| || ||||| |||||| ||||||| || ||||| ||||| ||||| || || || ||||||||  |||   ||  |    |||| | |||||| || |  ||     | |   ||  ||||   |     | |   |||||   ||  |||  |    |                    
TTGCTTGATACTGGTTTTTTCCATGCTGATCCACATCCGGGAAATTTGATCCGCACTCCAGATGGGAAGCTAGCTATACTAGACTTTGgtaacaatttactaaataagattatatggtgaaagatcatctttcaacatggttagcagcatcatacacatttttttaaaaatactttctgatgttagtt--------------------