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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGACACTGCAAGATGAAAGGACACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTTTCACATAAGCTAATACCGgtaagtctttccctgaagcagaatattgttggactttatagagcaagctgggcatggtcttcaaatccagttgtcttgttcttgtacatggattataata...

Basic information

species Arabidopsis thaliana
transcript AT3G19720.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19720.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv12s0055g00490.t01 (Vitis vinifera), 5'ss of exon 9
GTGAGACACTGCAAGATGAAAGGACACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTTTCACATAAGCTAATACCGgtaagtctttccctgaagcagaatattgttggactttatagagcaag-ctgggcatggtcttcaaatccagttgtcttgttcttgtacatggattataata---
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GGGAAACACTGCAGGATGAAAGGGTTAATGGAGGAGCATTTGTTGGCACTGATGGTCTTCAGTTCCCACAAAAGCTGATACCTgtaaggctgta--agcattagaagtgtgtggacatgggcattccatgactagactaatttattgtgcatggctcccagcttgctgagcat--tctaggatgcct