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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTACTTCGTTATCCTGATCATTTCTCAAGTGGTGTCTACCTCTGgtatgatatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtttatctttctgagtttgatattagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctag

Basic information

species Arabidopsis thaliana
transcript AT3G16785.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16785.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 8
AGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTACTTCGTTATCCTGATCATTTCTCAAGTGGTGTCTACCTCTGgtatgatatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtttatctttctgagtttgatattagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctag
| ||||||||  | || || ||||  | ||| |||  |||||||||||||||    || || || |||||||||||||||||||| ||||| ||| | ||||||||          | | |   | | || | |||   |||  ||||||    |    ||||  | |   |  || |      ||   |  || ||                                                                   
AAATCAACAGCTTGTACAGTAAACAAAAGCTACTTAACATTCATGAGAATGTAAAAGTTCTGCGATATCCTGATCATTTCTCAAGCGGTGTATACTTATGgtatgacg--------aatccgtttttgtctcccta---tgtt-caatgcaaact---atttaattataacaacttaactccttattttcactttaag------------------------------------------------------------------

upper sequence: AT3G16785.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 8
AGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTACTTCGTTATCCTGATCATTTCTCAAGTGGTGTCTACCTCTGgtatgatatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtttatctt-tctgagtttgatattagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctag
| || |||||  |||| || ||||  ||||| |||  ||||||||| |||||    || || ||||| |||||||| |||||||||||||| ||| | ||||||||| || |     ||||   | | ||  | |  |     | || | | ||| || ||||| |  ||||| |||  | |||  |  | ||||      |   ||                                                          
AAATTAACAGCTTATACAGTAAACAGAGGCTACTTAACATTCATGAAAATGTTAAAGTTCTGCGTTACCCTGATCACTTCTCAAGTGGTGTATACTTGTGgtatgat-tgattttttgttccc-tgtttcctttttgttaaataaaaagttttttttattttatttgatctgaatttttt-ttacttttattgttttg---cctttaag--------------------------------------------------------

upper sequence: AT3G16785.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA09G04620.1 (Glycine max), 5'ss of exon 9
AGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTACTTCGTTATCCTGATCATTTCTCAAGTGGTGTCTACCTCTGgtatgatatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtttatctttctgagtttgatattagataaactg----ttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctag
| ||||||||||| ||||||||    | ||||||| ||||||||||||||||| ||||| | || |||||||| || || || | |||||| ||||| |||||||  ||     | |  | |    | |     ||   | | | ||    |||    |||| | ||    |     | || |  || ||||    ||   |   |  ||| ||      |  || |     |                                   
AAATCAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGgtatgcaattacccaaaact-tggcgtttagtcttatggttttataacaaacttat--gttttttttatcaaac--aacatcaattatactgcacttttgtagtttattatttgtttgtgattattatacacag----------------------------------

upper sequence: AT3G16785.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA15G16270.1 (Glycine max), 5'ss of exon 9
AGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTACTTCGTTATCCTGATCATTTCTCAAGTGGTGTCTACCTCTGgtatgatatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtttatctttctgagtttgat--attagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctag
| || |||||||| ||||||||    | ||||||| ||||||||||||||||| ||||| | || |||||||| || || || | |||||| ||||| |||||||  ||     | |  | |   || |     ||   | | | ||    |||    |||| | ||    |   | ||  |||| |       ||       || ||| ||      |  || |     |                                   
AAATAAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGgtatgcaattacccaaaactttg-catttagtcttatggttttataacaaacttat--gttttttttatcaaacattatcaattatacttcacttttgtggtttcttatttgtttgtgattattatacacag----------------------------------

upper sequence: AT3G16785.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 9
AGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTACTTCGTTATCCTGATCATTTCTCAAGTGGTGTCTACCTCTGgtatg--atatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtt-tatctttctgagtttgatattagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctag
| ||||||||||| || || ||| | | ||||||| ||||||||||||||||| | ||||| || ||||||||||||||||||| ||| || || || |||||||  || |  |    ||| ||| || ||      | |  |  | | |  |   | | ||  |   ||| |||  ||| |  |       ||||| | | ||                                                               
AAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGgtatgtaatttactttgaagtccta-tagatgtaagaattgagctatagtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgtttatatacag-------------------------------------------------------------