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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCTGGCTCCTCTGCTCTCCCTCGACCTGTCATGCATCAATGGGAAAGTATCACAGGTCATCGTCTTTTGGAAAGATATGGCATGACTGAGgtaagtagattttcctgtctctttgagttaccataatcaataccttagaacaagcttaacacaagcttgttcttagtagttacatctactgaattaaaaaaaaatcttcaatattcccag

Basic information

species Arabidopsis thaliana
transcript AT3G16170.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16170.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 5'ss of exon 10
ATGTCTGGCTCCTCTGCTCTCCCTCGACCTGTCATGCATCAATGGGAAAGTATCACAGGTCATCGTCTTTTGGAAAGATATGGCATGACTGAGgtaagtagattttcctgtctctttgagttaccataatcaataccttagaacaagcttaacacaagcttgt-tcttagtagttacatctactgaattaaaaaaaaatcttcaatattcccag
|||| ||| || || || || |||   ||  | ||| | |  |||||     | |||||||| |||||||||||| |||| |||||||||||||| |  |       || |  ||||    |      |   | |  | | ||  |   || ||     |  | | ||   |||   ||    || |                           
ATGTGTGGATCATCGGCCCTTCCTTCCCCACTTATGAAACGGTGGGAGGAAGTGACAGGTCACCGTCTTTTGGAACGATACGGCATGACTGAGgttaaaaacacgaactcttccttttctatg----gacttacatttcataaatatgatatcattttttcatgttttgacagtcttattggttgtag--------------------------

upper sequence: AT3G16170.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 10
ATGTCTGGCTCCTCTGCTCTCCCTCGACCTGTCATGCATCAATGGGAAAGTATCACAGGTCATCGTCTTTTGGAAAGATATGGCATGACTGAGgtaagtagattttcctgtctctttgagttaccataatcaataccttagaacaagcttaacacaagcttgttcttagtagttacatctactgaattaaaaaaaaatcttcaatattcccag
|||| ||| || || ||||| |||   ||  | ||| |    |||||     | ||||| ||||||||||||||| | ||||| |||||||||||||  |   || ||  |||  |  |  |||  |||| ||     |    |  | |  ||  ||  ||| |   ||                                            
ATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAGgtaaaaaatattccccatctagtcaa--tacactaattaactgtatgactcctgatagacttaatattggttacag--------------------------------------------

upper sequence: AT3G16170.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 5'ss of exon 10
ATGTCTGGCTCCTCTGCTCTCCCTCGACCTGTCATGCATCAATGGGAAAGTATCACAGGTCATCGTCTTTTGGAAAGATATGGCATGACTGAGgtaagtagattttcctgtctctttgagtt--accata-atcaataccttagaacaagcttaacacaagcttgttcttagtagttacatctactgaattaaaaaaaaatcttcaatattcccag
|||| |||||||||||| || ||    ||||||||||| |||||||||| ||||||||| ||||||||||||||  ||||||| ||||||||||||||| ||||     ||    || | ||   ||  | ||  || | |    | | | |||     |     |||||   || ||    |  |    | | |  ||   ||  || ||   ||
ATGTGTGGCTCCTCTGCGCTTCCCTATCCTGTCATGCAACAATGGGAAACTATCACAGGACATCGTCTTTTGGAGCGATATGGAATGACTGAGgtaagt-gattcattagttgaattcatttttgccggatatttattcatggagaaacggttagtctgat----ttctttagagatattcttcttctggttatactaatggtttgatgtttgtag