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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGAAAACACATTAAATTATGGTCTCGAGAGAGTTTGGGCCATTGGTTACATCAAAAGTTCTCGGCGgtgagtttttgtacttttaatacttaatgcttattagaattttgatcaaaaagtagatgttctctattggtagaatttttgtttctgtcattattgtagc...

Basic information

species Arabidopsis thaliana
transcript AT3G15980.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 9
GCTAGAAAACACATTAAATTATGGTCTCGAGAGAGTTTGGGCCATTGGTTACATCAAAAGTTCTCGGCGgtgagttttt--------gtacttttaatacttaatgcttattagaattttgatcaaaaagtagatgttctctattggtagaattt--ttgtttctgtcattattgtagc-----------------------------------------------
||| || ||||||||||| |||||||| || ||||| ||||| ||||| ||| | || |||||||| |||| |||||||        | | ||||   | | | | |||| || ||||||  | |     |  ||  |    | ||| |   | |      || || |   ||| |                                                  
GCTTGAGAACACATTAAACTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGAGTTCTCGTCGgtaagttttttgtggatagaatttttgcaattaatttcttaatataattttt-taagcccttgaatagtgctgagtgggaagctgtgccaaattgtgcctgaattatgaaattttcttatccttaactcttttctcgtatcgggtgcattcaaacag

upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 9
GCTAGAAAACACATTAAATTATGGTCTCGAGAGAGTTTGGGCCATTGGTTACATCAAAAGTTCTCGGCGgtgagttttt--------gtacttttaatacttaatgctta------ttagaattttgatcaaaaagt-------agatgttctctattggtagaatttttgtttctgtcattattgtagc-------------------------------
||| || ||||||||||| |||||||| || ||||| ||||| ||||| ||| | || |||||||| |||| |||||||        | | ||||   | | | | ||||      | |  | | |||     ||         |  ||| |   | |  |  ||||||  | ||| | | | || |  |                               
GCTTGAGAACACATTAAACTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGAGTTCTCGTCGgtaagttttttctggatagaaattttgtaagtaatttcttaggccgttgaataatctgagtgggaaactgtgtcaaattgtgcctgaattatgaaattttcttatctttaactcttttctcataatcaaaattttcgggtgcattcaaacag