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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGAATATGCTGGGTGTTCTGCCACAAAACATCGGAAGTCTTTCGCGTCTTATCCGGCTTGACCTTCATCAGAACAgtaagtgtaaactgagaagataatatttctgccataccttttgctccagtaatagtcaaacttgattctcatatgtagttgctgaattgttttcgtatttgattcacgcag

Basic information

species Arabidopsis thaliana
transcript AT3G15410.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15410.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G35440.1 (Glycine max), 5'ss of exon 8
GTAAGAATATGCTGGGTGTTCTGCCACAAAACATCGGAAGTCTTTCGCGTCTTATCCGGCTTGACCTTCATCAGAACAgtaagtg--taaactgagaagataatatttctgccataccttttgctccagtaatagtcaaacttgattctcatatgtagttgctgaattgttttcgtatttgattcacgcag
  || ||| |||||  ||   | |||   | ||| ||| ||||||| ||||| ||||| |||||||||||||| |||||| |||   | ||   ||    || | |||||    |   ||| | | |   | |  |||  ||     || | |  | ||   ||   | |||| |||              
CAAAAAATTTGCTGAATGGGATTCCAACCAGCATTGGAGGTCTTTCACGTCTAATCCGTCTTGACCTTCATCAAAACAgtgagttctttaaacaagggtctactttttctttggtctttttggtttctccatttttcattctga---cttagaaatggtatgtgt-ctatttttgtag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164019753|gb|ES136273.1|ES136273
EST:     AAACATCGGAAGTCTTTCGCGTCTTATCCGGCTTGACCTTCATCAGAACA                         AAATTTCGTCTGTTCCACCATCAATAGGCGGTTGCTCCTCTCTTGTGGA-T
genomic: AAACATCGGAAGTCTTTCGCGTCTTATCCGGCTTGACCTTCATCAGAACAgtaagtgtaa ... attcacgcagAAATTTCGTCTGTTCCACCATCAATAGGCGGTTGCTCCTCTCTTGTGGAGT