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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAGCACATTACGAGGACGATGTTCGGGAGAAGCTCCGTTCCCTCAAATGGGCACCTATTGTTTATTCAACCGCAATAACTGGCCATAGCGTTGACAAgtgagtctccttcaaatgattcaaaaactattttcaaccttacagtccggttttacttagtctgtttgataatatataattcaaatgtag

Basic information

species Arabidopsis thaliana
transcript AT3G12080.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12080.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv06s0004g02070.t01 (Vitis vinifera), 5'ss of exon 10
CTGCAGCACATTACGAGGACGATGTTCGGGAGAAGCTCCGTTCCCTCAAATGGGCACCTATTGTTTATTCAACCGCAATAACTGGCCATAGCGTTGACAAgtgagtctccttcaaatgattca-----aaaactattttcaacctt-acagtccggttttacttagtctgtttgataat-atataatt-caaatgtag--
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CTGCAACATATTACGAGCAGGATGTCAGGGAGAAGCTTCGTGTTCTAGGTTGGGCACCTATTGTCTATTCAACCGCAATAGCTGGTCATAGCGTTGATAAgtatgcccttgcctgatagttttttttcataataatttactgtttttgtcattcactaatattatggccatgatgtaatcacttagtggctgggttagta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087924|gb|DR383683.1|DR383683
EST:     TGGGCACCTATTGTTTATTCAACCGCAATAACTGGCCATAGCGTTGACAA                         TATTGTGGTTGCTGCTGCGACGGTTCAAAAGGAGAGATCAAGAAGACTTAG
genomic: TGGGCACCTATTGTTTATTCAACCGCAATAACTGGCCATAGCGTTGACAAgtgagtctcc ... tcaaatgtagTATTGTGGTTGCTGCTGCTACGGTTCAAAAGGAGAGATCAAGAAGACTTAG